Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16950 1316 / 0 ATTRN1 transportin 1 (.1.2) AT2G16960 462 / 2e-153 ARM repeat superfamily protein (.1.2) AT3G08943 76 / 9e-14 ARM repeat superfamily protein (.1) AT5G53480 67 / 5e-11 ARM repeat superfamily protein (.1) AT3G08947 57 / 5e-08 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177700 [exp] 1604 / 0 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.006G103300 [exp] 81 / 2e-15 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.015G010400 [exp] 76 / 1e-13 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 66 / 7e-11 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 66 / 9e-11 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 45 / 0.0003 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 45 / 0.0003 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025083 [exp] 1474 / 0 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10023999 [exp] 1461 / 0 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10008864 [exp] 66 / 2e-10 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 66 / 2e-10 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 64 / 4e-10 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 64 / 4e-10 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 64 / 7e-10 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF13513 [poplar] [flax] HEAT_EZ HEAT-like repeat
Representative CDS sequence Show only first row Show all	>Potri.009G138200.1 pacid=42770959 polypeptide=Potri.009G138200.1.p locus=Potri.009G138200 ID=Potri.009G138200.1.v4.1 annot-version=v4.1 ATGGAGGCAGCGGCGGCGTGGCAGCCACAGGAAGAAGGATTCAAGGAGATCTGTGGATTACTAGAGCATCAGATTTCACCAACTTCAACCGCCGATAAGC TTCAGATTTGGCAACAACTTCAAAACTTCTCTCAACTCCCCGATTTCAATAATTACCTTGCCTTCATTCTTTCTCGCGCCGAGGGGAAATCGGTGGAGAT TAGGCAGGCGGCGGGATTATTGTTAAAAAATAACCTAAGAAATGCGTATAAAACTATGACGCCCGCGTATCAACAGTATATAAAATCGGAGTTGTTGCCG TGTTTAGGAGCGGCGGATAGGCATATAAGGTCGACGGTGGGGACCATTATTAGTGTTGTTGTTCAACTGGGTGGAATTTTGGGGTGGCCTGAGTTGCTGC AAGCTCTCATTACTTGTTTGGATAGTAATGATCTTAATCACATGGAAGGCGCTATGGATGCTCTGTCTAAGATTTGTGAGGATATTCCACAAGTTTTGGA TTCAGATGTGCCTGGGTTACCTGATCGACCCATTAAGATCATCCTTCCTCGATTATATCAGTTCTTCCAGTCACCTCATACCTCACTGAAAAAACTTGCG TTGGGTTCTGTGAATCAATACATTATGTTAATGCCTGCTGCTCTTTATGCATCCATGAATCAGTATCTTCAGGGTTTGTTTGCTCTTGCTAATGACCAGG CTGCAGAAGTGCGGAAATTGGTTTGTGCAGCTTTTGTACAGCTAATTGAGGTCAGGCCATCTTTCTTGGAGCCACATTTGAGAGATGTAGTTGAATATAT CTTGCAAGTCAACAAGAATGGCGATGATGAAGTGGCTCTTGAAGCCTGTGAATTCTGGTCTGCATACTGTAATGCTCAGTTACCACTTGAGAACTTAAGA GAATTCTTGCCACGTCTGATTCCGGTTTTGCTGTCGAACATGGCTTATGCTGATGATGATGAGTCGCTCGCTGAGGCTGAGGAAGATGAGTCTCTCCCAG ACAGGGATCAGGATCTGAAACCTCGGTTTCATACATCACGATTTCATGGATCAGATAGCGTGGAAGATGATGATGATGACATAGTGAATGTGTGGAATTT AAGGAAATGCAGTGCAGCTGCTCTTGACATTCTCTCAAATGTGTTTGGAGATGAGATTCTTCCAACATTGATGCCTGTTGTTGAGGCTAAGTTAGCTGCT AGCGGTGATGAATCCTGGAAAGACAGAGAAGCAGCAGTTTTGGCACTTGGTGCTGTTGCTGAGGGTTGCATTGATGGTCTTTATCCTCATTTGTCTCAGA TGGTGGAATTCCTTATTCCTCTATTAGATGACAAGTTCCCCCTCATACGAAGCATTTCCTGTTGGACAGTTTCCCGATTCAGCAAATACATTGTTCAGGA AAGTGGCCATCAAAAAGGCTATGAACAATTTGACAAAGTTCTTATGGGTCTTCTACGGAGAATATTGGATACAAACAAGCGTGTGCAAGAGGCTGCTTGT TCAGCTTTTGCAACACTAGAAGAGGAAGCCGCTGAAGACTTGGCACCACGTTTAGAGATTATTTTACAGCACCTCATGTGTGCTTTTGGGAAATATCAGA GACGGAATCTTAGAATTGTATATGATGCTATTGGAACTCTAGCAGATGCTGTTGGAGCAGAACTGAATAAGCCTGCTTATCTTGAAATTTTGATGCCACC ATTAATTGCAAAGTGGCAGCGGCTTTCAAATTCAGACAAAGATCTCTTTCCCCTGCTGGAGTGCTTTACATCCATAGCGCAGGCATTGGGTACAGGATTC TCTCAATTTGCTGAGCCTGTATTTCAGAGGTGTATAGCCATAATTCAGAGCCAACAATTAGCGAAGGTTGATCCTGTTACGGCTGGGTTTCTGTATGATA AAGAATTCATTGTTTGCTCAATTGATCTTCTCTCCGGAATTGCTGAGGGTCTTGGTAGTGGGATAGAAAGTTTGGTTTCACAAAGCAATTTAAGGGACCT GCTTCTGCAATGTTGCATGGATGATGCTTCTGATGTTCGGCAAAGTGCTTTTGCACTCCTCGGTGACCTTGCAAGAGTATGTGCTGTTCATTTGCGCCCC CGATTGCCTGAGTTTCTTGATGTTGCAGCCAAACAACTGTACACTCCTAAGCTGAAGGAAAGCATTTCAGTAGCAAATAACGCATGTTGGGCTATTGGAG AATTAGCAGTTAAGGTTCATCAAGAAATCTCTCCTATTGTTATGACTGTCATGCCATGCTTGGTTCCAATTCTCCAACATTCAGAGGAACTGAACAACAA GTCACTCGTAGAAAATAGTGCAATCACACTTGGGAGGCTTGCATGGGTTTGTCCTGAAATTTTATCACCGCACATGGAGCATTTCATGCAATCATGGTGC ATTGCTTTGTCCAAGATACATGATGATATTGAGAAAGAGGATGCCTTCCGAGGTCTATGTGCAATGGTCAGAAGAAATCCTTCTGGAGCTCTAAGTTCAC TTGTTTTCATGTGCAAAGCAATCGCAAGTTGGCATGAAATAAGAAGTGAAGAGCTACATAATGAAGTTTGCCAGGTGTTGCATGGTTATAAACAGATGCT CAGGAATGGAGCATGGGACCAGTACATGTCTGCATTGGAGCCCCCAGTGAAGGAAAAACTTTTGAAATATCAAGTGTAA
AA sequence Show only first row Show all	>Potri.009G138200.1 pacid=42770959 polypeptide=Potri.009G138200.1.p locus=Potri.009G138200 ID=Potri.009G138200.1.v4.1 annot-version=v4.1 MEAAAAWQPQEEGFKEICGLLEHQISPTSTADKLQIWQQLQNFSQLPDFNNYLAFILSRAEGKSVEIRQAAGLLLKNNLRNAYKTMTPAYQQYIKSELLP CLGAADRHIRSTVGTIISVVVQLGGILGWPELLQALITCLDSNDLNHMEGAMDALSKICEDIPQVLDSDVPGLPDRPIKIILPRLYQFFQSPHTSLKKLA LGSVNQYIMLMPAALYASMNQYLQGLFALANDQAAEVRKLVCAAFVQLIEVRPSFLEPHLRDVVEYILQVNKNGDDEVALEACEFWSAYCNAQLPLENLR EFLPRLIPVLLSNMAYADDDESLAEAEEDESLPDRDQDLKPRFHTSRFHGSDSVEDDDDDIVNVWNLRKCSAAALDILSNVFGDEILPTLMPVVEAKLAA SGDESWKDREAAVLALGAVAEGCIDGLYPHLSQMVEFLIPLLDDKFPLIRSISCWTVSRFSKYIVQESGHQKGYEQFDKVLMGLLRRILDTNKRVQEAAC SAFATLEEEAAEDLAPRLEIILQHLMCAFGKYQRRNLRIVYDAIGTLADAVGAELNKPAYLEILMPPLIAKWQRLSNSDKDLFPLLECFTSIAQALGTGF SQFAEPVFQRCIAIIQSQQLAKVDPVTAGFLYDKEFIVCSIDLLSGIAEGLGSGIESLVSQSNLRDLLLQCCMDDASDVRQSAFALLGDLARVCAVHLRP RLPEFLDVAAKQLYTPKLKESISVANNACWAIGELAVKVHQEISPIVMTVMPCLVPILQHSEELNNKSLVENSAITLGRLAWVCPEILSPHMEHFMQSWC IALSKIHDDIEKEDAFRGLCAMVRRNPSGALSSLVFMCKAIASWHEIRSEELHNEVCQVLHGYKQMLRNGAWDQYMSALEPPVKEKLLKYQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.009G138200 [exp]	0	1
AT1G09740			Adenine nucleotide alpha hydro...		Potri.005G157100 [exp]	1.41	0.9333
AT3G26000			Ribonuclease inhibitor (.1)		Potri.008G179800 [exp]	2.23	0.9162
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.009G168500 [exp]	2.82	0.9087
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	3.00	0.9185
AT1G07860			unknown protein		Potri.009G093700 [exp]	3.60	0.8936
					Potri.011G070800 [exp]	4.24	0.9142
AT5G61910			DCD (Development and Cell Deat...		Potri.015G106400 [exp]	5.56	0.8755	Pt-BON1.2
AT1G61900			unknown protein		Potri.004G016000 [exp]	6.00	0.8837
AT5G43670			Sec23/Sec24 protein transport ...		Potri.008G161300 [exp]	6.70	0.9055
AT4G24840			unknown protein		Potri.012G096100 [exp]	7.00	0.9118

Compare expression of checked genes

Potri.009G138200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.