Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09880 335 / 1e-109 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 333 / 6e-109 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT5G03470 332 / 2e-108 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 332 / 4e-108 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT5G25510 329 / 2e-107 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G21650 326 / 1e-105 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 322 / 2e-104 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G54930 320 / 9e-104 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 303 / 1e-97 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G177900 [exp] 725 / 0 AT3G26020 363 / 3e-121 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054300 [exp] 336 / 1e-109 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 335 / 3e-109 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 334 / 3e-109 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 333 / 6e-109 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 331 / 4e-108 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 328 / 1e-106 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.017G070100 [exp] 328 / 1e-106 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.002G226200 [exp] 325 / 2e-105 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025085 [exp] 543 / 0 AT4G15415 353 / 7e-117 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10023998 [exp] 537 / 0 AT3G09880 359 / 3e-117 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10032082 [exp] 338 / 1e-110 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 334 / 4e-109 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 333 / 4e-109 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 332 / 3e-108 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10023920 [exp] 328 / 4e-107 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 322 / 2e-105 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10013141 [exp] 323 / 4e-105 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10021511 [exp] 321 / 5e-105 AT3G09880 739 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.009G138400.5 pacid=42771971 polypeptide=Potri.009G138400.5.p locus=Potri.009G138400 ID=Potri.009G138400.5.v4.1 annot-version=v4.1 ATGGGTGTTCTCAGAAACTCACCGAAAGCTTCTCCAATAAAAAAATCTGCCACCCTTCAACACCTCTTTGATTTGGAGGCCAACAATAGCAATGGCACTA AGATTTACAGTCCCAAAAGTAGTAAGCAGTCTATCACTGAATCTGAATATGGAGAGATCTTGTCTATTATATCTCACTGTTGCTCCATCTTCACTTTCAC TGATCCTTTGGAGTCTCCCTCAGAGCAAGATGTCAAGCGATTAAAGCTCTTCCAGCTTCTTTCTTTCATGAAGAAACCCAAAAAGCCCCTGCCTGAAGAA ATTATACGCCCGCTTGTGTCTATGCTATCGGCAAACCTTTTCAGGCCTCTCCCGCCATCTGCCAAACGAACCGTCGTCTGTGAATTACCTGAGGATGAAG ACCTCGTTTCCACTCTCTCGCCTGCTTGGCCACACCTGCAAGTAGTTTACGACATTCTGCTTCGACTAGTCCTCAGTATTGATCCCAAAGTTCTCCGTGG TTATGTCGATGAACGTTTCCTTGTCAACCTTCTGTCCGTCTTTCAGACCGAAGACCGAAGAGAACGCGATAATCTGAAGAATGTTTACCACCGGATATAT TCCAAGTTCACCTTCTACAGGGCAATCATGAGGAAATCTATGAAGGATGTTTTCTTGCACTATGTTTTCGAGTCAGAGAAGCATTCTGGGATTGGTGAGC TGCTGGAGATATGGGGAAGCATCATCAATGGTTTTACTGTCCCACTGAAAGAAGAGCACAAGCTGTTCTTGATGAGAGTGCTTATTCCTTTGCACAAGGC CAAGGGGATGCCAGTTTACCATAGACAGCTGGCTTATTGTGTTAATCAATTTGTGCAGAAGGAACCAATGCTTGGTGGGACTGTTGTTAGAGGGATCTTA AAGTATTGGCCTGCCACAAATTGTCAGAAAGAAGTTCTGCTCATTGATGAATTGGAGGAACTGGTGGAGAATATAGATCCTGATCACTATAGAAAGTTAG CTTTGCTTATATGTACCCAAATTTCGAGGTGCTTGAACAGTTTGAACTCACAGGTTGCAGAACGTGCAATATACGTGTGGAACAATGAACAATTTGTGAA GATGGCATCATCAATGATGGAAGAGGTGTTTCCTGTGGTAGTAGAAAGCGTAGAAAAGAACCTGAAGTGGCACTGGAGCAAGAGTGTAAAACAACTGACA GAAAATGTGAAGACAATGATAGAAGAAATGGATCCAAATTTATATGACAAGTGCCTGGAAGAAATAGCCCACAAAGAGTACTTAGCTGGCCAAGAAGATA TCAAGAGGAAAGAAAATTGGGAAAGAGAAAAGATTGAAAAGGAAACCAACACGGGAGAAACGATGGCCATTGTTTCTGGGCTTCCGAAACAATTTTCAGG TTTGGTTTTTCCTCATGATTATAAACTACCATTTGGGATTCAGAGATGTAGTAATGAAGTCAAATTTAGTGATCACGGTGCTGTTCAGCTAGAATTTAGA AGGGTGAATCTACCTTTTGCTTCTTCCTTTTAA
AA sequence Show only first row Show all	>Potri.009G138400.5 pacid=42771971 polypeptide=Potri.009G138400.5.p locus=Potri.009G138400 ID=Potri.009G138400.5.v4.1 annot-version=v4.1 MGVLRNSPKASPIKKSATLQHLFDLEANNSNGTKIYSPKSSKQSITESEYGEILSIISHCCSIFTFTDPLESPSEQDVKRLKLFQLLSFMKKPKKPLPEE IIRPLVSMLSANLFRPLPPSAKRTVVCELPEDEDLVSTLSPAWPHLQVVYDILLRLVLSIDPKVLRGYVDERFLVNLLSVFQTEDRRERDNLKNVYHRIY SKFTFYRAIMRKSMKDVFLHYVFESEKHSGIGELLEIWGSIINGFTVPLKEEHKLFLMRVLIPLHKAKGMPVYHRQLAYCVNQFVQKEPMLGGTVVRGIL KYWPATNCQKEVLLIDELEELVENIDPDHYRKLALLICTQISRCLNSLNSQVAERAIYVWNNEQFVKMASSMMEEVFPVVVESVEKNLKWHWSKSVKQLT ENVKTMIEEMDPNLYDKCLEEIAHKEYLAGQEDIKRKENWEREKIEKETNTGETMAIVSGLPKQFSGLVFPHDYKLPFGIQRCSNEVKFSDHGAVQLEFR RVNLPFASSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.009G138400 [exp]	0	1
AT3G09280			unknown protein		Potri.006G092200 [exp]	1.73	0.6950
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.004G205000 [exp]	3.74	0.7235
AT2G33580			Protein kinase superfamily pro...		Potri.005G128401 [exp]	4.47	0.7191
AT3G15115			unknown protein		Potri.001G372800 [exp]	5.91	0.6784
AT5G53820			Late embryogenesis abundant pr...		Potri.004G107700 [exp]	8.48	0.6457
AT2G12646			PLATZ transcription factor fam...		Potri.018G116000 [exp]	19.89	0.6475
AT5G37490			ARM repeat superfamily protein...		Potri.004G083900 [exp]	22.31	0.6779
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	23.06	0.6347
					Potri.006G090066 [exp]	23.64	0.6412
					Potri.010G224650 [exp]	29.84	0.5835

Compare expression of checked genes

Potri.009G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.