Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04380 426 / 5e-144 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT1G04050 375 / 3e-121 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT5G43990 370 / 1e-119 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G73100 120 / 2e-28 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 120 / 3e-28 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G23740 115 / 1e-26 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT5G13960 112 / 5e-26 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G35160 107 / 3e-24 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 106 / 1e-23 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT1G17770 102 / 2e-22 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048100 [exp] 466 / 1e-157 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.014G192500 [exp] 445 / 9e-147 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.002G257400 [exp] 442 / 4e-146 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.007G033000 [exp] 123 / 5e-29 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 121 / 2e-28 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.001G036800 [exp] 119 / 6e-28 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 119 / 7e-28 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.002G237950 [exp] 113 / 4e-26 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 113 / 7e-26 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012513 [exp] 520 / 0 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 501 / 2e-175 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10005476 [exp] 402 / 8e-135 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10024946 [exp] 393 / 1e-127 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 355 / 1e-112 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10027956 [exp] 189 / 2e-57 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10008198 [exp] 183 / 3e-54 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10001011 [exp] 118 / 2e-27 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10031984 [exp] 115 / 8e-27 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10029470 [exp] 115 / 9e-27 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF05033 [poplar] [flax] Pre-SET Pre-SET motif CL0214 [poplar] [flax] UBA PF10440 [poplar] [flax] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Potri.009G138600.2 pacid=42770929 polypeptide=Potri.009G138600.2.p locus=Potri.009G138600 ID=Potri.009G138600.2.v4.1 annot-version=v4.1 ATGGCACGAAATACTGGTGGTCACAGTACAAAAATAGCAGAGGCATCCATGGCAGTGGCGCATTTTGGCTTCGCCGAAGAAAAGGTTAAGGAAACGCTAA AAAGACTGGTAAAATTGTATAAGGATGACTGGAAGCTCATTGAAGAAGATAATTATAAAGAACTGATTGATATTCTAACAAAGGAGAGTAATGAGGAATC AAACTTGAATTACAATTTCGAACATCGGCATGGCCAGGCTTCATTTTCTGCTGTTAACTTTGCTAACAAAAAAGCTAAAATTTTGGGTTCTAGTCCACCA GCTCAGGATAAAGGAAAGAGTCTAGAATCTCCTCAAGCTGCTGCTAGAGGAACAAGATCAAATTTTGTGAAGGATAAAGTTATGGAGGATAGAGTACATG AAGGTGTTTCCAATTCATCACAGTTTGATATTGCATCTTCAGTCAATTCAGAAGTGAAGGTCTCCTTAATTTGTAACTCTTCTGGAAATTCTTATTTCAG ACAACGGAGTTTGGATGCGGTTCTAGAAGAGGTGGAAGATGAATGCCGCAAAACATATGGAATCCAGAATCCTGATTTCTCTTTGGTGAAGTTGATGGAA AAGGTGTGCCGGTTCTTCTTGGAGATGGACAACGGTTCTAGCAGTGAAACTGGGAGAAACATTTGTGAGAAATCAAAGCAGCCTGAAGGAAAAGAAGTTG TAACAGATGATAACGAGGACAACTCTACATTGGAGCCGAGTAAGGTTCTACAAGACTCACAATCTTCAGAACCACAGATGATGGAGGCTGTCCTTCAAAA GAAATACCCCATTTATCTCAAAGATATATCTCGTGGTGAAGATAATATACCAGTTCCCCTGGTGAATGAAAGCAGCACACTAGAGTTGCCAGATTTTATC TACATAAAAAATAACATGGTATACCAAGGTGGCCATGTTGATTTTTCTCTTGCTCGAATATCAGAAGATAACTGTTGTGCACAATGTCTTGGAGATTGTC TATCCTCAGACTTGCCTTGTGCATGTGCTGCGGAAACAGGTGGCGAGTTTGTTTACACGCAGAAGGGAATGCTGAAGGAAGAATTTTTGGATGAAGCCAT TGCCGTGTCTCTGGATCCTCAAAGAAAACACTTCTACTACTGTGAAATCTGCCCCCTGCAGAATGAACCGCAACAGAGATATGGGAAAATAAAACGATGC AAGGGCCATTTAACTAGGAAATTTATAAAAGAGTGCTGGAGTAAATGTGGATGCAACAAGAAATGTGGAAATCGTGTTGTCCAGCGAGGGATACAAGTTG CTTTGCAGGTTTTTGCAGCACCTGAAGGGAAAGGGTGGGGTGTTCAATCTGTGAATGCCCTGAAGAAAGGCACTTTCATTTGTGAGTATGTAGGCGAAAT TGTGACGAATCAGGAACTATACGAGCGAAACAATGAAAGGGCTGCTAAAAAGGAGAGGCATACTTATCCAGTGCTGCTGGATGCAGACTGGGGCTCTGAA AGGATACTGGAGGATGAGGAGGCCCTTTGCTTGGACGCAACAGAATTTGGAAACATTGGCAGGTTTATCAATCACAGGTGTTATGATTCTAACTTGATTG AGATTCCAGTGGAAGTGGAGACTCCGGATCATCACTATTATAGACATGCTTTTTTCACAACTAGAGGTATTGAGCCGATGGAAGAGTTGACATGGGATTA TGGTATTCAGTTTGATGACAAGCATCATCCGATCAAAGCATTCAAATGCAAGTGTGGAAGCACGGGCTGCCGAGACAAGAAAAGACGGCATTAA
AA sequence Show only first row Show all	>Potri.009G138600.2 pacid=42770929 polypeptide=Potri.009G138600.2.p locus=Potri.009G138600 ID=Potri.009G138600.2.v4.1 annot-version=v4.1 MARNTGGHSTKIAEASMAVAHFGFAEEKVKETLKRLVKLYKDDWKLIEEDNYKELIDILTKESNEESNLNYNFEHRHGQASFSAVNFANKKAKILGSSPP AQDKGKSLESPQAAARGTRSNFVKDKVMEDRVHEGVSNSSQFDIASSVNSEVKVSLICNSSGNSYFRQRSLDAVLEEVEDECRKTYGIQNPDFSLVKLME KVCRFFLEMDNGSSSETGRNICEKSKQPEGKEVVTDDNEDNSTLEPSKVLQDSQSSEPQMMEAVLQKKYPIYLKDISRGEDNIPVPLVNESSTLELPDFI YIKNNMVYQGGHVDFSLARISEDNCCAQCLGDCLSSDLPCACAAETGGEFVYTQKGMLKEEFLDEAIAVSLDPQRKHFYYCEICPLQNEPQQRYGKIKRC KGHLTRKFIKECWSKCGCNKKCGNRVVQRGIQVALQVFAAPEGKGWGVQSVNALKKGTFICEYVGEIVTNQELYERNNERAAKKERHTYPVLLDADWGSE RILEDEEALCLDATEFGNIGRFINHRCYDSNLIEIPVEVETPDHHYYRHAFFTTRGIEPMEELTWDYGIQFDDKHHPIKAFKCKCGSTGCRDKKRRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.009G138600 [exp]	0	1
					Potri.007G040950 [exp]	6.16	0.9980
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	8.12	0.9972
					Potri.015G004900 [exp]	8.24	0.9966
					Potri.009G020201 [exp]	9.16	0.9971
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177800 [exp]	12.24	0.9929
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.010G068600 [exp]	13.71	0.9861
AT5G05800			unknown protein		Potri.014G061450 [exp]	13.74	0.9971
AT3G03680			C2 calcium/lipid-binding plant...		Potri.008G130550 [exp]	13.85	0.9857
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.005G224700 [exp]	15.87	0.9968	GY4.2
					Potri.009G036600 [exp]	17.88	0.9967

Compare expression of checked genes

Potri.009G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.