Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35140 602 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G38480 509 / 3e-178 Transducin/WD40 repeat-like superfamily protein (.1) AT3G45620 396 / 4e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G10940 159 / 6e-42 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 62 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 62 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT4G18905 51 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49430 50 / 3e-06 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT4G18900 49 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52360 49 / 1e-05 Coatomer, beta' subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178700 [exp] 759 / 0 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G158300 [exp] 142 / 3e-36 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103132 [exp] 116 / 1e-29 AT5G10940 390 / 2e-132 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G103066 [exp] 76 / 9e-16 AT5G10940 209 / 4e-64 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 64 / 6e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G194100 [exp] 62 / 6e-10 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G019601 [exp] 56 / 4e-08 AT4G18905 566 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G019833 [exp] 55 / 8e-08 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.013G079600 [exp] 53 / 4e-07 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023993 [exp] 615 / 0 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10025088 [exp] 615 / 0 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034751 [exp] 420 / 9e-142 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10033290 [exp] 412 / 2e-140 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10040538 [exp] 93 / 1e-21 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10040537 [exp] 63 / 1e-11 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 65 / 3e-11 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 65 / 4e-11 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10015348 [exp] 55 / 8e-08 AT4G18905 527 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003855 [exp] 49 / 3e-06 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.009G139000.2 pacid=42771575 polypeptide=Potri.009G139000.2.p locus=Potri.009G139000 ID=Potri.009G139000.2.v4.1 annot-version=v4.1 ATGATGAAAAAAAGAAGCAGAACGGACCTCGATCAAGCAGTAGTTAATGTTTGTAAACGCGAACTCGGTCAGCTCTCCACTCGCGATTTCGCTCACCGTC TCGCCGCCTCCGAGGATCTTGTATTGAGGCTTGAAATACACAAGAAGTTGGAGAAGCACGAAGGGTGCGTGAACACGCTGAGTTTTAATTCTGGTGGTGA TGTTTTGATATCGGGCTCAGATGACCTGCGGGTGATTTTATGGGATTGGGAAACTGGGCGTGTTAAACTTTCCTTTAATTCGGGTCATCGTAATAATGTG TTTCAAGCTAAGTTCATGCCTTTTTCTGATGATCGGACTATTGTTACTTGTGCTGCTGATGGCGAGATTCGACAAGCTCAAATTCTCGAAGGGGGAGAAG TGAAAACTATATTGCTTGGAAAACACAAAGATTCACGAGTTCATAAGTTGGCTATTGAACCTGGGAGTCCTCATATATTTTATTCTTGTGGCGAGGATGG AGTGGTTCAACATTTTGATTTGAGAACTAGGTCTGCCACAGAACTTTTTACTTGCCGATCCATTAATGATCCAAGGAGTTTCCAGCCATATGTCCATCTA AATGCCATTGCTATTGATCCAAGAAACCCGAATCTCTTTGCAGTTGGGGGAATGGACGAGTTTGCTAGACTTTATGACATCCGCAAGTATAGTTGGGATG GGTCAAGTGATTTTGGTCAACCTGCAGATTACTTCTGTCCTCAGCATTTGATTGGTAATGGGGATACTGGAATTACAGGCTTGTCATTCTCAGACCAGAG TGAGCTTCTAGTCTCATATAATAACGAGTTCATCTATCTTTTTACAAGAGACATGGGTTTGGGAAATCCTCCATTTCCATCCTTTTCATCCCCAATTTCA ATGGGCAGTGATACAAGTGAAGTAGAACCTGGGTCTATAGCATCTTCATCATCTATGGATGTGGATGGGAAAAATGCTGCCCAAGCTTATAAGGGGCATA GAAATTGTGAGACTGTGAAGGGTGTGAGCTTTTTTGGGCCAAGATGTGAGTATGTTTCTAGCGGCTCTGATTGTGGTCGGATATTTATTTGGAAGAAAAG GGGTGGAGAGCTTATTCGTGTTATGGAAGCAGATAGGGATGTGGTAAATTGTACTGAGCCTCATCCTCATACCATGGCGCTTGCTAGCAGCGGAATCGAG TCTGATATAAAAATATGGACTCCAAAGGCTATTGAGAGAGCTACTCTGCCAACAAATATTGGACAGGTGAAACCAAAGGCTAGGGGATGGATGTACCGCT TAGCTTCACCGGAGGACTTGATGTTGCAATTATTTTCACTTCAAAGGCAGAGGACTAGCCCAGAAAGCGTGGTGCAGAACTCGGTTATGGATAGCGAACT TCTAGAGCTTATACTATCATTCAATGCTAACAGTGACGTTTCTTCAGATGATGGAGGAGATGCTGCAAATCACGATGACTCGTTGGGTTAG
AA sequence Show only first row Show all	>Potri.009G139000.2 pacid=42771575 polypeptide=Potri.009G139000.2.p locus=Potri.009G139000 ID=Potri.009G139000.2.v4.1 annot-version=v4.1 MMKKRSRTDLDQAVVNVCKRELGQLSTRDFAHRLAASEDLVLRLEIHKKLEKHEGCVNTLSFNSGGDVLISGSDDLRVILWDWETGRVKLSFNSGHRNNV FQAKFMPFSDDRTIVTCAADGEIRQAQILEGGEVKTILLGKHKDSRVHKLAIEPGSPHIFYSCGEDGVVQHFDLRTRSATELFTCRSINDPRSFQPYVHL NAIAIDPRNPNLFAVGGMDEFARLYDIRKYSWDGSSDFGQPADYFCPQHLIGNGDTGITGLSFSDQSELLVSYNNEFIYLFTRDMGLGNPPFPSFSSPIS MGSDTSEVEPGSIASSSSMDVDGKNAAQAYKGHRNCETVKGVSFFGPRCEYVSSGSDCGRIFIWKKRGGELIRVMEADRDVVNCTEPHPHTMALASSGIE SDIKIWTPKAIERATLPTNIGQVKPKARGWMYRLASPEDLMLQLFSLQRQRTSPESVVQNSVMDSELLELILSFNANSDVSSDDGGDAANHDDSLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35140			Transducin/WD40 repeat-like su...		Potri.009G139000 [exp]	0	1
AT5G63440			Protein of unknown function (D...		Potri.012G096500 [exp]	1.00	0.8137
AT2G46540			unknown protein		Potri.014G100250 [exp]	3.00	0.7068
AT1G10660			unknown protein		Potri.010G042600 [exp]	6.00	0.7264
AT1G55170			unknown protein		Potri.003G037900 [exp]	7.34	0.7433
AT3G13340			Transducin/WD40 repeat-like su...		Potri.014G147400 [exp]	7.68	0.6451
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.013G059300 [exp]	21.35	0.6957	GTF901,Pt-TBP1.3
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G011200 [exp]	21.81	0.7130
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104100 [exp]	23.74	0.7186
AT4G26620			Sucrase/ferredoxin-like family...		Potri.001G369300 [exp]	26.53	0.7021
AT5G44090			Calcium-binding EF-hand family...		Potri.005G227100 [exp]	29.15	0.6792

Compare expression of checked genes

Potri.009G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.