Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62260 749 / 0 MEF9 mitochondrial editing factor 9 (.1) AT4G02750 504 / 7e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 441 / 2e-146 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 426 / 2e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G35030 397 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53600 387 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 359 / 8e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G32415 356 / 8e-113 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G16835 345 / 5e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77010 338 / 1e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 504 / 5e-170 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G019900 [exp] 478 / 4e-160 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 426 / 2e-140 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 425 / 5e-140 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G038400 [exp] 410 / 3e-135 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G087300 [exp] 384 / 1e-123 AT1G32415 851 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G111300 [exp] 353 / 2e-110 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G140400 [exp] 338 / 2e-108 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 340 / 2e-107 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012514 [exp] 763 / 0 AT1G62260 689 / 0.0 mitochondrial editing factor 9 (.1) Lus10013540 [exp] 476 / 6e-159 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030549 [exp] 452 / 7e-150 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012897 [exp] 418 / 6e-138 AT4G02750 469 / 4e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013149 [exp] 413 / 2e-135 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003857 [exp] 348 / 4e-111 AT4G02750 404 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 345 / 2e-108 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 344 / 2e-108 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 342 / 6e-108 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 337 / 9e-107 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G139200.1 pacid=42772347 polypeptide=Potri.009G139200.1.p locus=Potri.009G139200 ID=Potri.009G139200.1.v4.1 annot-version=v4.1 ATGTTACGCTGTATAAGCGCTGTCGTTTCCAAGCGTGGATTCATACGAGCTCGTCTTCTTTCTTCATATACAAGCCCACACAGTTCAGCTCAGGACCTCT ACTTGTACGAGTTCAACAAGAAGATCTCTAATTTGGCTAAAAATGGTCGAATTGATGAAGCAAGAGCATTGTTTGATCAAATGGAAGAAACAAATACGGT TTCATGGAACGCAATTATAAGGGCCTATGTGAAACGTAGAGAAATTGCTAAAGCAAGGAAACTGTTCGATGAGATGCCTCAAAGAGACATTGTTTCATGG AACTTAATGATTTCGGGGTATGTTTCGTGTCATGGGATCAGGTTCTTAAAAGAAGGAAGAAACTTGTTTGATAGAATGCCGGAGAGGGATATTGTATCCT GGAATACGATGATTAGTGGGTATGCGAAGAATGGGAGAATGGATGAGGCGTTGAGGATGTTTAAATTGATGCCGGAGGGGGATGTTGTGTCTTGGAATGC CATTGTTACTGGGTTTTTGCAGAATGGTGACGTGGCTCGTGCACTTGAGTATTTTGAGAGAATGCCGGAGAGGGATGCTGCGTCGCTTAGTGCGCTTGTG TCTGGTCTTATTCGGAATGGGGAATTGGACGAGGCAGCGAGAGTGGTGGTTAGGTTTGAGAGAGATGGTGGTAGGAAAGAGAATTTGTTGCAAGCTTATA ATACTCTGATTGCGGGGTATGGTCGGAGAGACAGGGTTGATGAAGCTCGGAAACTTTTTGATCAAATACCGTTTTGTGATGGCAAGGGAAAAGGAGGAGA TGGAAGGTTCGGGAGGAATGTGGTGTCATGGAATACGATGATCATGTGCTATGTTAAGGCAGGAAATATTGTTTTTGCTAGGGAACTCTTTGACCAAATG ATGGAACGAGATACCATTTCTTGGAATACCATGATTAGTGGTTATGTTAACATGTTAGATATGGACGAGGCCTCCAGACTTTTTTGTGAAATGCCAAATC CTGATATTTTTTCGTGGAATAAGATGATTGCAGGGCATGCTCAGATTGGTGATTTGGATCGTGTTAATGATTTATTTGGGAGGATGCCCCAAAAGAACTT GGTGTCATGGAACTCTGTGATAACAGGATATGAGAAAAATGATGATTATATTGGAGCAATCAAGATCTTCATTCAGATGCAAGTTGAAGGAGAGAAACCT GACCGGCATACCTTATCTTCGGTTCTTAGTGTGTCTGCTGGGATAGTTGATCTTCAACTGGGAATGCAGATCCATCAGCTGGTAACAAAGACAGTTATAC CAGATGTGCCAATAAATAATGCCCTCATTACCATGTACTCAAGATGTGGCGCAATAATCGAGGCAGGGACAATTTTTGATGAGGTGAAACTGCAAAAAGA AGTAATTTCTTGGAATGCAATGATTGGAGGATATGCTTCTCATGGTTATGCTGTGGAGGCTCTGGAAGTTTTCAAATTGATGAAAAGTTTTGACGTGCGA CCTACTCATATAACATTTATTTCAGTTTTGCATGCCTGTGCTCATGCAGGACTAGTCGAAGAAGGTCGAGAGATATTTGAATCCATGGCTGGTGAATTTG GAATTGAACCAAGTGTTGAGCATTATGCCTCACTGGTGGACATCATGAGCCGTCATGGGCAGCTGGAGCAGGCACTGGATTTGATCAATAGCATGCCATT TGAACCAGATAAGGCTGTTTGGGGTGCATTACTGAGTGCTGCTAAGGTGCATAACAAAATAGAGGTGGCCCGAGTTGCTGCTGAAGCATTGATAAGACTT GAGCCTGACAGTTCGGCCCCATATGTCTTGCTATACAATATGTATGCTGATGTAGGGCAATGGGACAGTGCAGCAGAAGTGAGAATAATGATGGAAAGGA GTAATATCAAGAAGCAAGCAGCATATAGCTGGGTGGATTCCTCCCATTGGTGA
AA sequence Show only first row Show all	>Potri.009G139200.1 pacid=42772347 polypeptide=Potri.009G139200.1.p locus=Potri.009G139200 ID=Potri.009G139200.1.v4.1 annot-version=v4.1 MLRCISAVVSKRGFIRARLLSSYTSPHSSAQDLYLYEFNKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIVSW NLMISGYVSCHGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARALEYFERMPERDAASLSALV SGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQM MERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKP DRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVIPDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVR PTHITFISVLHACAHAGLVEEGREIFESMAGEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRL EPDSSAPYVLLYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVDSSHW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62260		MEF9	mitochondrial editing factor 9...		Potri.009G139200 [exp]	0	1
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.005G053600 [exp]	1.41	0.9032
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	6.00	0.8974
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	7.07	0.9094
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	7.34	0.9031
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	8.66	0.8953
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	9.16	0.8938
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	12.32	0.8911
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	12.48	0.8791
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	13.22	0.8920
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	13.41	0.8809

Compare expression of checked genes

Potri.009G139200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.