Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17033 475 / 8e-165 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT2G31400 66 / 2e-11 GUN1 genomes uncoupled 1 (.1) AT3G61520 63 / 3e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28460 62 / 5e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G28370 62 / 5e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 61 / 1e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G18940 57 / 2e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 56 / 4e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40400 56 / 4e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 56 / 6e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G153900 [exp] 67 / 1e-11 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G118500 [exp] 62 / 6e-10 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.008G098700 [exp] 60 / 2e-09 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 60 / 3e-09 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 59 / 8e-09 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.006G015900 [exp] 56 / 4e-08 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050300 [exp] 55 / 6e-08 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G368700 [exp] 56 / 7e-08 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G250200 [exp] 55 / 8e-08 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025090 [exp] 459 / 6e-161 AT2G17033 415 / 4e-143 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10023992 [exp] 332 / 2e-101 AT3G18310 518 / 4e-163 unknown protein Lus10003657 [exp] 72 / 6e-13 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 69 / 3e-12 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10039056 [exp] 65 / 9e-11 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 65 / 9e-11 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016725 [exp] 56 / 1e-08 AT5G61990 131 / 4e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033110 [exp] 58 / 2e-08 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10013894 [exp] 57 / 2e-08 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012268 [exp] 56 / 6e-08 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.009G139300.1 pacid=42770841 polypeptide=Potri.009G139300.1.p locus=Potri.009G139300 ID=Potri.009G139300.1.v4.1 annot-version=v4.1 ATGCACGCGCACGTCAGGTATCAACAAAAGATAACAACCTCGCACGTGCCATTGAACCACCACCACCTCAGCCACCGTCAACAACCACTACCTTATCTTT CACAGCCAACATCACCACCACTGAATTTATCAACCAAATGGAACAACTTTAAATGTTTAGCAGCAATTAGCAAACAAGCCCAGCGTTTCTTCTCTGCGGT ATTGCCCACCGTTGCCACAAGAGATACTTCAGCTACTAACCGTTTGATCAAGAAATTTGTAGCATCATCACCGAAATCAATCGCCCTTGATGCACTCTCT AATCTTCTCTCCCCCGACTCCACTCACCACCCCCTGCTGTATCTTCTCACTCTCCCTCTCTATTTAAAGATAAGTGAAGCATCATGGTTTAGTTGGAATC CTAAGTTAGTTGCACAAGTTGTTGTCTTGCTGGATAAACAAGGCCTAGACAAAGAGTTAAAAGCTTTGATGTCTGAAACAGTTTCAAGATTACAGTTTAA AGAGAGGGAGCTTGTTCTTTTTTATTGCAATTTGATTGGGTTTAACTCAAAACACAATTGGGTTCGTGGGTTTGATGATTCTTATTCTCGTTTGAACCAG TTTGTTAGTGACTCCAACTCTGTTTATGTAAAAAAGCAGGGTTATAAAGCAATGATTAGCGGGTTATGTGAAATGGGTAGGGCTAGAGAAGCAGAGGATT TGATTGGAGAGATGAGAGAGAGAGGACTGAAGCCTAAATTGTTTGAATTTAGGTGTGTTTTATATGGCTATGGAAGATTAGGATTGTTTAAAGATATGGA GAGGATTCTTGATAAAATGGAAAGTGGAGAGATTGAAGTTGATACAGTCTGTGCTAATATGGTTCTTGCATCCTATGGAGCTCACAATGCACTTCCTGAA ATGGGATTGTGGCTGCGAAAGATGAAAACTCTGGGCATTCCATTGTCAATAAGGACTTGCAATTCAGTTCTGAATTCCTGTCCCACGATCATGGCATTGA TGAGAAACTTGGATGCTTCTTATCCAGTTTCGATTCAAGAGTTGTTGAAGATCTTGAGTGAGGAAGAATTAATGTTAGTCAAAGAATTGATTGAATCATC GGTTTTGAAAGAGGCAACGAAGTGGGATACTTCAGAGGGGAAGTTGGATTTACATGGAATGCACTTGGGTTCAGCATATGTGATAATGTTGCAGTGGATG GAGGAGACGAGGAATAGATTGAGTGATGGAGAGCATGTAATTCCAGCAGAGATTACAGTTGTTTGTGGATCGGGGAATCATAGCACCGTTAGAGGGGAAT CTCCAGTTAAATCTATGATCACACAGATAATGGCTCAAACGAGGAGTCCAATGAGAATCGATAGGAAGAACATTGGTTGTTTCGTTGCTAAAGGAAATGT TGTCAAGAAGTGGCTATGTTAA
AA sequence Show only first row Show all	>Potri.009G139300.1 pacid=42770841 polypeptide=Potri.009G139300.1.p locus=Potri.009G139300 ID=Potri.009G139300.1.v4.1 annot-version=v4.1 MHAHVRYQQKITTSHVPLNHHHLSHRQQPLPYLSQPTSPPLNLSTKWNNFKCLAAISKQAQRFFSAVLPTVATRDTSATNRLIKKFVASSPKSIALDALS NLLSPDSTHHPLLYLLTLPLYLKISEASWFSWNPKLVAQVVVLLDKQGLDKELKALMSETVSRLQFKERELVLFYCNLIGFNSKHNWVRGFDDSYSRLNQ FVSDSNSVYVKKQGYKAMISGLCEMGRAREAEDLIGEMRERGLKPKLFEFRCVLYGYGRLGLFKDMERILDKMESGEIEVDTVCANMVLASYGAHNALPE MGLWLRKMKTLGIPLSIRTCNSVLNSCPTIMALMRNLDASYPVSIQELLKILSEEELMLVKELIESSVLKEATKWDTSEGKLDLHGMHLGSAYVIMLQWM EETRNRLSDGEHVIPAEITVVCGSGNHSTVRGESPVKSMITQIMAQTRSPMRIDRKNIGCFVAKGNVVKKWLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17033			pentatricopeptide (PPR) repeat...		Potri.009G139300 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Potri.007G094900 [exp]	1.73	0.9574
AT5G62650			Tic22-like family protein (.1)		Potri.004G072100 [exp]	4.69	0.9254
AT1G78010			tRNA modification GTPase, puta...		Potri.002G092600 [exp]	5.19	0.9279
AT5G48730			Pentatricopeptide repeat (PPR)...		Potri.002G243600 [exp]	6.00	0.9186
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	15.19	0.9341
AT2G31890		ATRAP	RAP (.1)		Potri.017G001600 [exp]	15.23	0.9427
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	15.55	0.9165
AT2G39670			Radical SAM superfamily protei...		Potri.008G056500 [exp]	16.73	0.9324
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	18.70	0.9316
AT3G23020			Tetratricopeptide repeat (TPR)...		Potri.010G078900 [exp]	19.13	0.9316

Compare expression of checked genes

Potri.009G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.