Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17020 638 / 0 F-box/RNI-like superfamily protein (.1) AT1G55590 257 / 4e-77 RNI-like superfamily protein (.1) AT5G23340 54 / 2e-07 RNI-like superfamily protein (.1) AT2G25490 54 / 4e-07 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 51 / 2e-06 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 49 / 1e-05 F-box/RNI-like superfamily protein (.1) AT3G58530 42 / 0.0009 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179571 [exp] 1000 / 0 AT2G17020 665 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G169800 [exp] 214 / 2e-61 AT1G55590 617 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 53 / 4e-07 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 50 / 3e-06 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G061700 [exp] 49 / 1e-05 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.016G128400 [exp] 48 / 2e-05 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 47 / 3e-05 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.019G123400 [exp] 47 / 5e-05 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 45 / 0.0001 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023988 [exp] 603 / 0 AT2G17020 519 / 3e-178 F-box/RNI-like superfamily protein (.1) Lus10012518 [exp] 595 / 0 AT2G17020 548 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10025093 [exp] 233 / 1e-72 AT2G17020 216 / 5e-67 F-box/RNI-like superfamily protein (.1) Lus10025094 [exp] 181 / 7e-54 AT2G17020 152 / 8e-44 F-box/RNI-like superfamily protein (.1) Lus10022651 [exp] 95 / 2e-23 AT2G17020 61 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10022652 [exp] 95 / 2e-22 AT2G17020 102 / 1e-25 F-box/RNI-like superfamily protein (.1) Lus10030102 [exp] 55 / 2e-07 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 49 / 1e-05 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 47 / 3e-05 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10002014 [exp] 47 / 6e-05 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G139500.1 pacid=42772854 polypeptide=Potri.009G139500.1.p locus=Potri.009G139500 ID=Potri.009G139500.1.v4.1 annot-version=v4.1 ATGGCTGACCCTGACGAGGAAGAAGAAGGGAGCTTGGATCAGCTACCAGCAACGGTACTTGAAACCATAGTATCAAAACTCGACGTGGCATCAATCTGCT CCGTTTCTTCCACTTGCAAGACCTTCAACGCTTGTGCTTCTCATATCCTCACTTTCATCCCCAGTTTCGACCTCCTTGATATTGCACCGTCAATTGATTT ATTAAGGCCTTTATTGCCTCCAAATCCTTACCTTAAAAGCTTAAAGCTTGATTGTGGTCGGCTTGATGATTCTGCAATTAATGTTGTGGTTCGGGATTCC TTGCATGAGCTTTATTTACATAATTGCGCGGATTTTAGTGGGAAATTGCTTTCTGAGATTGGAGGAAAGTGCGCGGATTTGAGGTATCTGTACTTGGGAT CGGTGGCGGAAAAAAGAGGACGTGCTATTCATATATCTGATCTGGAGGAGCTACTTAGAGGTTGCACACGATTGGAAGCGCTGATTTTGATGTTTGATGT CTCATTATTTCTTCGTCATAATTTTGCTCTAGTATGGGCTTTGGTTTCAGAAAAACTGACTTCTCTTGAGATTGGGTATGTTTCTTCAGTGATGGTGACT GAACTGGTTGGCCCAAGTTTGGGACCTCATCAATCACCAAATCATGTTCGACCATCCATTCTGCCTGGCATTCAGAAATTGTGCCTTTCTGTAGACTATA TTACTGACACCATGGTTAGCACAATATCGAAAGGTCTCATGTCCTTAACACATTTGGATCTTCGAGATGCTCCTCTCATAGAACCAACAATTACATTTGA TCTCACCAACTCTGGTCTTCAGCAGATTAATCAGCATGGAAAACTGAAACATCTCTCATTGGTTCGGAGCCAAGAATTCGCCATTACATATTTTAGACGT GTTAATGATCTTGGAATGCTATTAATGGCTGACAAGTGTGAGAACATGGAAAGTATTTGTCTTGGAGGCTTCTGTCGAGTTACAGATACAGGATTCAAAA CAATCTTGCATTCATGCTCTAGTCTGTACAAGCTCCAGGTGTCTTATGGAATCCATTTGACTGATCTGGTCTTTCATGATATCTCTGCAACATCCCTGTC TTTGATACATGTGAGCTTGAGATGGTGCAACCTTTTAACCAACCATGCAATAAAAAACTTGGTATTGAATACACGCCTTAGAGTTCTTGACTTGAGAGAC TGCAAACACTTTGGAGACGAAGCCCTTAGAGCTATCAGCGCTCTTCTGGAATTGAAGATTTTACTGCTGGATGGTTCCAATATAAGTGATTTTGGATTGT CTTACTTGAGAGGAATTATAAATTCATTAGTTTCTCTGTCTGTGAGAGGATGCAAAAGACTAACAGATAAATGCATCTCTGCTTTATTTGAAGGCTCTTC TAAACTGAAGTTACAACAACTGGACCTATCAAATCTTCCTAACCTGTCTGATAATGGAGTTCTGGCACTTGCAAAATGCCGGGTTCCAATTTCTGAACTT CGAATGCGGCAATGTCCACTTATTGGTGATACTTCAGTTATGGCATTAGCTTCAATGCGGGTTGATGAGGACAGATTGCATGGTTGTAGTTTGCGGCTGT TGGACCTTTACAACTGCGGCGGTATAACACAACTTTCATTCCGGTGGTTAAAGAAACCCTATTTTCCAAGGTTGAGATGTTTGGGGGTGACAGGAAGTGC AAGTAGGGATATTATAGATGCTTTAGCTAGGAGTAGACCATTCTTGCATGTGGCATGCCATGCCGAGGAGCTGGGGTCCAACCAGTGGGATAACTTGCAT GGTTTATACATGCATGACAACGATGAGGTGGATGAACTTGAACAATGGCTTCTCGAAGAAGAGGGTGGCTATAATGATGAGGAGATGATGGATGCTGATG ATGATGCAGAACTACTGGATCATTTAGCCTTGTAA
AA sequence Show only first row Show all	>Potri.009G139500.1 pacid=42772854 polypeptide=Potri.009G139500.1.p locus=Potri.009G139500 ID=Potri.009G139500.1.v4.1 annot-version=v4.1 MADPDEEEEGSLDQLPATVLETIVSKLDVASICSVSSTCKTFNACASHILTFIPSFDLLDIAPSIDLLRPLLPPNPYLKSLKLDCGRLDDSAINVVVRDS LHELYLHNCADFSGKLLSEIGGKCADLRYLYLGSVAEKRGRAIHISDLEELLRGCTRLEALILMFDVSLFLRHNFALVWALVSEKLTSLEIGYVSSVMVT ELVGPSLGPHQSPNHVRPSILPGIQKLCLSVDYITDTMVSTISKGLMSLTHLDLRDAPLIEPTITFDLTNSGLQQINQHGKLKHLSLVRSQEFAITYFRR VNDLGMLLMADKCENMESICLGGFCRVTDTGFKTILHSCSSLYKLQVSYGIHLTDLVFHDISATSLSLIHVSLRWCNLLTNHAIKNLVLNTRLRVLDLRD CKHFGDEALRAISALLELKILLLDGSNISDFGLSYLRGIINSLVSLSVRGCKRLTDKCISALFEGSSKLKLQQLDLSNLPNLSDNGVLALAKCRVPISEL RMRQCPLIGDTSVMALASMRVDEDRLHGCSLRLLDLYNCGGITQLSFRWLKKPYFPRLRCLGVTGSASRDIIDALARSRPFLHVACHAEELGSNQWDNLH GLYMHDNDEVDELEQWLLEEEGGYNDEEMMDADDDAELLDHLAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	0	1
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G068400 [exp]	2.44	0.7076	Pt-CIPK24.1
AT1G72820			Mitochondrial substrate carrie...		Potri.006G223600 [exp]	2.64	0.7074
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	3.60	0.7555
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	4.24	0.7548
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Potri.001G051200 [exp]	5.19	0.7008
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	5.74	0.7169
AT1G68490			unknown protein		Potri.012G056500 [exp]	7.21	0.7123
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	8.66	0.7101
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	10.19	0.6939
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.006G254100 [exp]	10.19	0.6605	EBF1.2,EBF3

Compare expression of checked genes

Potri.009G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.