Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 363 / 2e-124 O-methyltransferase family protein (.1) AT4G35150 315 / 1e-106 O-methyltransferase family protein (.1) AT5G54160 193 / 1e-58 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 176 / 5e-52 O-methyltransferase family protein (.1.2) AT1G77520 173 / 1e-50 O-methyltransferase family protein (.1) AT1G63140 160 / 1e-45 O-methyltransferase family protein (.1.2) AT5G53810 158 / 7e-45 O-methyltransferase family protein (.1) AT1G77530 147 / 8e-41 O-methyltransferase family protein (.1) AT3G53140 144 / 1e-39 O-methyltransferase family protein (.1) AT1G33030 143 / 1e-39 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139800 [exp] 469 / 3e-167 AT4G35160 343 / 4e-117 O-methyltransferase family protein (.1) Potri.019G102900 [exp] 299 / 9e-100 AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) Potri.013G141301 [exp] 286 / 5e-95 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G143800 [exp] 286 / 5e-95 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G136300 [exp] 283 / 1e-93 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 259 / 2e-84 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 256 / 6e-83 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 242 / 3e-77 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 241 / 5e-77 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023986 [exp] 430 / 3e-151 AT4G35160 338 / 6e-115 O-methyltransferase family protein (.1) Lus10025098 [exp] 425 / 2e-149 AT4G35160 343 / 6e-117 O-methyltransferase family protein (.1) Lus10023987 [exp] 400 / 4e-139 AT4G35160 325 / 3e-109 O-methyltransferase family protein (.1) Lus10017699 [exp] 263 / 2e-85 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10033656 [exp] 254 / 7e-82 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10025097 [exp] 227 / 5e-74 AT4G35150 183 / 2e-57 O-methyltransferase family protein (.1) Lus10032304 [exp] 221 / 3e-69 AT4G35160 170 / 2e-49 O-methyltransferase family protein (.1) Lus10013945 [exp] 220 / 4e-69 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10015311 [exp] 218 / 5e-68 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10018629 [exp] 215 / 5e-67 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.009G139700.1 pacid=42772932 polypeptide=Potri.009G139700.1.p locus=Potri.009G139700 ID=Potri.009G139700.1.v4.1 annot-version=v4.1 ATGGAGAGGACATCAAGAGATTCAAAAATGAAAGAGGAAGAAGATGTGCAAGCAGGAGTTGAAATATGGAAATATGTACTTGGGTTTTCTGGTATTGCTG TAGTTAAGTGTGCTATTGAGCTTGGAATAGCAGAAGCCATCGAAAACCATGAGGGTACTCCTATGGCATTATCAGAGCTATCATCCACCCTAGGATGTGT TCCATTCTCTCTTGATCGCATCATGCGGTTCTTGGTGCATCACCATTTTTTCAAAGAGGAACCAACTATCCAAGGCACCGCAGGTTATGTGCACACACCT CTTTCTCGTCGTTTACTTAGGCAGGGAGAAGACAGCATGGCTGATTTTATATTGTTGGAGAGCAGCCCTGTGATGCTAGCACCATGGCATCATCTAAGTT CGCGTGTTCGAATAAATGGGACTGCAGCATTTGAAGCGGCTTATGGTGGTGACATATGGAAATATGCAGCAGCAAATCCTGCTTTCAACAGGCTAATTAA CGATGCCATGGCTTGTGATGCTAGACTGGCAGTGTCTGCTATAATTGAAAGCTGTCCAAAGCTGTTTGATGGACTAAAAACTTTGGTAGATGTTGGTGGC GGTAATGGGACTGCTTTGGGAAAGTTTGTCAAGGCTTTTCCTTGGATTGAAGGCATCAACTTTGATCTTCCTCATGTTGTGTCTGTTGCAGCGGAATGTG AAGGAGTAAAGCAAGTTGGAGGAGATATGTTCGACAGTGTTCCAAAGGCTGATGCTGTTTTTATCATGAAGGTTTTGCAAGACTGGAACAATGATGATTG TGTCCGAATTCTTAAAAAATGTAAAGAAGCTATTCCAAAGGACAAAGGGAAGGTCATTATTGTTGAAACTGTGATTGGAGAAGAGAAACAGGACAGTTTT GAGTTTGTGAGGTTCATGAAAGACATGGCAATGATGGCTTTCACCAACTCAGGAAAGGAGAGGACCTCTGAGGAATGGGATTGTGTCCTCAAGGAGGCTG GCTTTAGCAGCTACAACATCATACCAATTCGGGCTGTGCAATCTGTCATCGAGGCTTTCCCTTAA
AA sequence Show only first row Show all	>Potri.009G139700.1 pacid=42772932 polypeptide=Potri.009G139700.1.p locus=Potri.009G139700 ID=Potri.009G139700.1.v4.1 annot-version=v4.1 MERTSRDSKMKEEEDVQAGVEIWKYVLGFSGIAVVKCAIELGIAEAIENHEGTPMALSELSSTLGCVPFSLDRIMRFLVHHHFFKEEPTIQGTAGYVHTP LSRRLLRQGEDSMADFILLESSPVMLAPWHHLSSRVRINGTAAFEAAYGGDIWKYAAANPAFNRLINDAMACDARLAVSAIIESCPKLFDGLKTLVDVGG GNGTALGKFVKAFPWIEGINFDLPHVVSVAAECEGVKQVGGDMFDSVPKADAVFIMKVLQDWNNDDCVRILKKCKEAIPKDKGKVIIVETVIGEEKQDSF EFVRFMKDMAMMAFTNSGKERTSEEWDCVLKEAGFSSYNIIPIRAVQSVIEAFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.009G139700 [exp]	0	1
AT2G31083		AtCLE5, CLE5, C...	CLAVATA3/ESR-RELATED 5 (.1)		Potri.011G063750 [exp]	1.00	0.9311
AT3G07620			Exostosin family protein (.1)		Potri.014G170900 [exp]	1.41	0.9304
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G073900 [exp]	7.14	0.9194	CTS2.13
AT4G02270		RHS13	root hair specific 13 (.1)		Potri.017G145800 [exp]	8.36	0.8821
AT4G35160			O-methyltransferase family pro...		Potri.009G139800 [exp]	9.21	0.9155
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.016G023200 [exp]	9.48	0.9053
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G023340 [exp]	10.19	0.9042
AT5G63660		LCR74, PDF2.5	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Potri.004G138100 [exp]	11.22	0.8958
AT1G51920			unknown protein		Potri.003G061200 [exp]	12.24	0.8701
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.016G023360 [exp]	16.43	0.8956

Compare expression of checked genes

Potri.009G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.