Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 342 / 6e-117 O-methyltransferase family protein (.1) AT4G35150 310 / 3e-105 O-methyltransferase family protein (.1) AT5G54160 206 / 9e-64 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 184 / 2e-55 O-methyltransferase family protein (.1) AT1G51990 176 / 2e-52 O-methyltransferase family protein (.1.2) AT5G53810 171 / 4e-50 O-methyltransferase family protein (.1) AT1G33030 166 / 8e-49 O-methyltransferase family protein (.1) AT3G53140 161 / 1e-46 O-methyltransferase family protein (.1) AT1G63140 160 / 6e-46 O-methyltransferase family protein (.1.2) AT1G77530 154 / 1e-43 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G139700 [exp] 469 / 2e-167 AT4G35160 363 / 1e-124 O-methyltransferase family protein (.1) Potri.019G102900 [exp] 284 / 2e-94 AT4G35160 242 / 3e-77 O-methyltransferase family protein (.1) Potri.013G136300 [exp] 270 / 8e-89 AT4G35160 246 / 8e-79 O-methyltransferase family protein (.1) Potri.013G141301 [exp] 269 / 2e-88 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.013G143800 [exp] 269 / 2e-88 AT4G35160 245 / 2e-78 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 258 / 4e-84 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 246 / 1e-79 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 243 / 3e-78 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 236 / 2e-75 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025098 [exp] 404 / 2e-141 AT4G35160 343 / 6e-117 O-methyltransferase family protein (.1) Lus10023987 [exp] 402 / 1e-140 AT4G35160 325 / 3e-109 O-methyltransferase family protein (.1) Lus10023986 [exp] 397 / 8e-139 AT4G35160 338 / 6e-115 O-methyltransferase family protein (.1) Lus10017699 [exp] 242 / 1e-77 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10033656 [exp] 239 / 8e-77 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10025097 [exp] 229 / 2e-75 AT4G35150 183 / 2e-57 O-methyltransferase family protein (.1) Lus10015311 [exp] 213 / 2e-66 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10018629 [exp] 211 / 6e-66 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10013945 [exp] 207 / 3e-64 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10038331 [exp] 206 / 5e-62 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.009G139800.1 pacid=42772548 polypeptide=Potri.009G139800.1.p locus=Potri.009G139800 ID=Potri.009G139800.1.v4.1 annot-version=v4.1 ATGGCAGTTGTGAAGTGTGCCATTGAGCTTGGAATAGCTGATGCCATTGAAAACAATGAAGGCCCTATGACACTATCAGAGCTATCATCCTCACTTGGAT GTGCTCCTTCCTCTCTTTACCGCATTATGAGGTTCTTAGTCCATCACAACATTTTCATAGAGAAACCTTCTAGCCAAGGCACCACGGTTTATGTACAGAC AGCACTTTCTCGCCGACTACTTAAGAAGGGAGAAAAGAGCATGGTTGATCTTCTTTTGTTGGAGAGCAGCCATGTAATGATGGCACCATGGCATAATCTT AGTTCCCGTGTCCTGAACGATAACAATTCACCATTTGAGGGGGCTCATGGAGATGATATATGGAAATATGCGTTGGCAAATCCAGTTCACAGCAAGCTCA TTGATGATGCAATGGCTTGTGATGCTAAGCTGGTAGTGCCAGAAATAGTTGAAGGTTTTCCAGAGGTGTTTGATGGGGTTAAAACTTTGGTGGATGTTGG TGGGGGTAATGGGACTACTTTGCAGATGCTGGTTAAGGCTTTTCCTTGGATCCAGGGCATAAACTTTGATCTTCCCCACGTTGTTTCCGTTGCTTCAGAA TCTGAAGGTGTTAAGCATGTTGGTGGTGACTTTTTTGAGAGTGTTCCAAAGGCTGATGCTGCTTTCCTAATGTGGGTTCTTCATGACTGGAACGATGAAG AGTGCATCCAAATCCTGAAAAACTGTAAAGAAGCTATACAGAGTGACAAGGGGAAGGTGATAATTGTTGAAGCTGTGGTTGGTGAAGAGAAAGGCGACAA ACTTGAATTTGTGAGGCTAATGTTAGACATGGTAATGATGTCTCATACCGACGCAGGCAAAGAAAGGACCTCTAAGGAATGGGGATACGTTCTTAAGGAG GCTGGCTTTAGCAGCTACACCATAAAACCAATTCGTGCAGTGCAATCTGTCATTGTTGCTTCCCCTTGA
AA sequence Show only first row Show all	>Potri.009G139800.1 pacid=42772548 polypeptide=Potri.009G139800.1.p locus=Potri.009G139800 ID=Potri.009G139800.1.v4.1 annot-version=v4.1 MAVVKCAIELGIADAIENNEGPMTLSELSSSLGCAPSSLYRIMRFLVHHNIFIEKPSSQGTTVYVQTALSRRLLKKGEKSMVDLLLLESSHVMMAPWHNL SSRVLNDNNSPFEGAHGDDIWKYALANPVHSKLIDDAMACDAKLVVPEIVEGFPEVFDGVKTLVDVGGGNGTTLQMLVKAFPWIQGINFDLPHVVSVASE SEGVKHVGGDFFESVPKADAAFLMWVLHDWNDEECIQILKNCKEAIQSDKGKVIIVEAVVGEEKGDKLEFVRLMLDMVMMSHTDAGKERTSKEWGYVLKE AGFSSYTIKPIRAVQSVIVASP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.009G139800 [exp]	0	1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032400 [exp]	1.41	0.9671
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.002G134500 [exp]	1.41	0.9559	CYP721.5
AT3G45070			P-loop containing nucleoside t...		Potri.010G138450 [exp]	4.89	0.9438
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193200 [exp]	6.00	0.9426
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.002G109601 [exp]	7.41	0.9393
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G025200 [exp]	7.48	0.9371
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.008G193400 [exp]	7.74	0.9380
AT4G35160			O-methyltransferase family pro...		Potri.009G139700 [exp]	9.21	0.9155
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G102901 [exp]	9.38	0.9239
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200700 [exp]	10.58	0.9164

Compare expression of checked genes

Potri.009G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.