Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38440 1222 / 0 IYO MINIYO, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025099 [exp] 1606 / 0 AT4G38440 1216 / 0.0 MINIYO, unknown protein Lus10023985 [exp] 1599 / 0 AT4G38440 1209 / 0.0 MINIYO, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08620 [poplar] [flax] RPAP1_C RPAP1-like, C-terminal PF08621 [poplar] [flax] RPAP1_N RPAP1-like, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.009G139900.4 pacid=42771748 polypeptide=Potri.009G139900.4.p locus=Potri.009G139900 ID=Potri.009G139900.4.v4.1 annot-version=v4.1 ATGGACGTCAACAAGCAGAACATTAGTAGAAGGAAAAACCAGACAAATCCCTCAACTTCAACTCAAAAGATTTTTGGAGCCAACAAACTAGAAATTGGTG AAAATGATGCTTCACGTTTAATTGGTAGCATTATTGAAAAGGGTATTTCGGAAACCCCACAAAACAAGCCTACTCCTCCTCCTCAGCTCACCGTTTTGCC TTTCCCTGTTGCTCGCCACCGCTCCCATGGTCCTCATTGGGGTCCGATAAGTAGCAGAAAGGATGCTAATGATGATAATGAGGATGATGGTGAAGAAGAT GATGATGATTCTATTTACTCTAATCCAATATCGGCTTTTGCGCATCCAGTAAAGAGGAAGCAGAAAAAGGGTTTGGATCTTAGCCGGTGGAGAGAGTTGG TCCCGAGTGATAATTCATTGGAGATTGACGAGGTAGAAAAAAATAGGGCTGGATTAAAGAAGACAGGAAAATATAGGAAGGATGGAGAAGCAGTAGATCA CGTGGAGAATAGAAAGTTGTTAAATGACCCCTTTCGAGCTAGCGAGGTTCCAATGGAAGTGGATATAGAAACGGATTTAAGTTCTTCTATGCCTCCAGCT AAAGTGAAAGAGTCTGTCACTTCTGTAGCTGATATGGAGATAAATAACCGTGCATTGTCAGAGATGCTAAAGAAGCGAGAGCAGCTCAATCAAACTGTAG TTTCTAGCTCTGGTTTCAATAGTCATGGGAATGAACAAGGGTCTAAGCTTCTCGAGAGTGAGATTGATGCAGAAAATCGTTCCCGGTTGCAGAGCATGTC AGCTGAAGAGATTGCAGAAGCACAGGTTGAGATAATGGAGAAGATGAACCCTGAGTTGTTGAACTTGCTGAAAAAACGTGGCCAAGAAAAATTGAAGAAG AAAAATGTCTCGAGTTCAGACGAGGCTGTCAGTAGTCAAGTGGATAGTATCCCAATTGAGAATCGCTTGATCAAACACTCAGAGATTTCTCCTCATGCAG GGAGTGAGAGGCCAGAGATGATGACAACGAATATATCAAAAGACACAAAGAGTGGGCTAGATAACAATGTGCTGCATGATTTAAGCACAACCAGTGGCTG TTTGTGGAATACTTGGAGTGAGAGGGTTGAGGCAGTTAGAGGATTAAGGTTTTCTTTGGAAGGGACTGTTATTGCAGATGAACCCGATACTGGTAATATA TCCAGTGACAATGGGCTTAGCGCTGATAATGTAGCTGAACGTGACTTCTTGCGGACTGAGGGAGACCCTGGTGCAGCAGGATACACAATCAAAGAAGCAG TTCAACTTACTAGAAGTGTGATTCCGGGACAACGGGCTCTTGCATTGCATCTTCTTGCATCTGTGCTTGATAATGCGATACATAGTATCCAACAAAATAA AGTTGGATCTACTGTGAGCAATGCTAATCAAGTTGACAAGTCAGATGATTGGGAGGCTATTTGGGCCTTTGCACTTGGCCCTGAACCTGAGCTTGTTTTA GCATTGAGGATGTGTCTTGATGATAATCACCATTCTGTAGTTTTAGCCTGTGCAAAAGTTATTCAGTCTGTACTCAGTTGTGATTTGAATGAGACTTTCT TTGAGATTTCAGAGAAAATTGCAACTTGTGAGAAGGATATCTTCACTGCTCCTGTTTTTCGAAGCAAACCAGACATTGATGCTGGTTTTCTTCATGGTGG TTTCTGGAAGTATAATGCTAAACCTTCTAATATTATGGCTTTCTCTGAGGATATCGTTGATGATGAGATTGAAGGCAAACACACAATTCAGGATGATATT GCTGTTGCTAGCCAGGATTTTGCTGCAGGTTTGGTTAGGATGGGAATCCTTCATAAGATGCGCTATCTTCTGGAAGCTGACCCTTCTGCTCCTTTGGAAG AATGCATAATTTCTATACTTCTCGGTATAGCAAGGCATTCCTTAACATGTGCAAATGCAATTATGAAGTGTCAAAGGCTTGTCAATATGGTTGTCCACAG GTTTACTATGGGAGATAATATAGAAGTTCGCCCTTCTAAAATAAAATCTGTTAGGCTTTTGAAGGCGTTGGCTCAATCTGACAAGAACAATTGCATTGAG TTAATAAAGAATGGGTTTGTCCAGGCTATGACATGGCATCTGTATCGGTATACTTCCTCCCTTGATTACTGGCTAAAATCTGGGAAGGAGATCTGTAAAC TATCATCAGCTTTGATGGTTGAAGAACTACGTCTTTGGAAGGCCTGCATCCATTATGGGTTCTGTATATCATGCTTTTCAGATATCTTCCCTGCATTGTG CTTGTGGTTGAATCCACCAACATTCACGAAACTTCAAGAGAACAATGTTCTCGGTGAATTTGCTTCAGTCTCTAAGGAGGCATATCTTGTTTTGGAGGCA TTGTCTAGAAATCTTCCAAATTTCTATATGCAGAAGCATGCAAGCAATCAGATGTCAGATTGTGCTGGTGATGAACAAGAAAGTTGGTCTTGGAGCTTCG TGACTCCAATGATTGATTTAGCTCTAAAGTGGATAGCATCCATAAGTGATCCATACATTTCTAAAATCTTTGAGTGGGAGAAAGGAAATAGGAGTGAATT TGTTTTTCAAGATTCATCTATTAGTTCCTTGTTGTGGGTCTATTCAGCTGTCTTGCATATGCTCTCCACATTGCTTGAGAGATTGATCCCAGAGGATGCC TTGAGACTCCAAGGAAGTGGTCAGCATGTGCCATGGTTGCCAGAATTTGTTCCTAAGATTGGACTTGGAGTTGTTAAAAATGGGTTTTTGAGCTTCATTG ATGAACTGTGCCATTTGAGACAGCACAGTAACTCTGAAACATCATTAGCTTCTGTTTGTTGCCTCCATGGGCTAATCCGTGTTTCTGTATCCATTGATAA TTTGATTCAATTAGCTAAGAGTGGGGTCCATAGTCCACCTTCCCAAGAATACAGATTCTCAGGAGAATCAAAGATACTCGAGGATGGGATACTAAAGAGT TCTTTGGTTGAATTGAAATGTGTGCTTAATCTTTTTATTAAGTTTGTAACATCAGAATGGCACTCTGTGCAGTCAATTGAGACATTTGGTAGAGGAGGAC CAACTCCAGGGGCAGGAATTGGTTGGGGTGCCTCTGTTGGAGGATTTTGGTCCATGACTGTTTTGTTGGCTCAAACAGATGCGAGAATGCTAACCAGCAT GCTAGAAATCTTCCAGAACTTGTCTACCACAGAAGTTCCAACTGATGAAGAAATGGTGTTCGCAATGAACATGATCTCTTCTCTTTTAGGAGTTTTCCTA ACCATTGGACCAAGGGATAAGCCTGTTATGAAGAAGGCGCTGGATATTTTGCTTGATGTCCCTGTTCTTAAGTATCTTGACTTCTATACACGGAGATTTC TACAATTGAATGAGAGAGTGAAACTTTTTGGATGGGAATATAAAGAAGAGGACTATGTGTCCTTTAGCAACACATTGGCTTCTCACTTTAAGAATAGATG GTTGTCTGTGAAGAGGAAATTGAAAGCCACACCAGAGGACAATTCCAAGGGAAAATCATCCCTGGAAACCATACATGAGGATCTGGACATATCAGACATG ACATGGCAAGATAATCACTTAACTTCTTTGACAGCAGAGTGGGCTCACCAGAGACTGCCGCTTCCCTTGCATTGGTTTCTCAGTCCAATCGCAACCATCT CCAATAACAAACAGGGTTGTCTTCAAAGTTCTTCTGATACACGGAATCCTACTGAGCACACCCATGATACACTTGAAGTTGCTAAAGGCGGGCTTTTCTT TCTGCTAGGCCTGGAAACCATGTCCTCTTTCCTGCCTACTGATGCTCCCTCTCCTGTTCGCTTCACACCTTTAATTTGGAAGTTGCATTCTCTATCTGTC ATGCTACTTAGTGGAATGGGTGTGCTTGAGGATGACAAGAGTAGGGATGTTTACGAAGCCTTGCAAAACCTCTATGGTCAGCTTCTTGATGAATCAAGAT CTGTTAGAAGTGCTGAACACTTTTTGGAGGATAATGTAAATGTAGTTCCAGAAACTGGGAAGAAATCTGCCTTGGAGTTTTTGAGGTTTCAATCAGAGAT TCACGAGAGTTATTCTACATTTCTTGAAACTCTTGTAGAGCAGTTTGCTTCTATATCCTATGGTGATATAATTTTTGGACGGCAAGTGGCTGTATATTTG CATCGTTGCACTGAAACTCCTGTGAGACTTGCTGCCTGGAATGGATTGGCCAATGCTCATGTTCTTGAAATTCTGCCACCTTTGGAGAAATGCTTTGCTG AGGCAGAAGGCTACCTTGAACCTGTTGAGGACAATGAAGGCATTCTGGAAGCTTATGTCAAAGCATGGGTTTCTGGTGCTCTTGACAGAGCTGCAACTCG AGGATCAATGGCATTTACCCTGGTTCTACACCACCTTTCATCCTTCATTTTCCTGTTTCATGCCAATGACAAGATAACGCTGCGAAATAAGCTTGCAAAA TCTCTTTTGCGAGACTACTCCAAGAAGCAGAGACACGAGTTCATGTTGCAGGGAATTATGCTGGAATTGGTTTGTTATTACAAGCTATCATCTCGCTTGC CTGAGAAGCAGGAAGGTTTGCCACTGCAGGCCAGTGATATTGAGAAAAGGTTTGAAGTCCTCGTGGAAGCCTGTGACAGAGATTCATCTCTTTTGATTGA GGTGGAGAAATTAAAATCTGCTTTTGTGAAGAAACAGTTTGTTGATAGACTCTGA
AA sequence Show only first row Show all	>Potri.009G139900.4 pacid=42771748 polypeptide=Potri.009G139900.4.p locus=Potri.009G139900 ID=Potri.009G139900.4.v4.1 annot-version=v4.1 MDVNKQNISRRKNQTNPSTSTQKIFGANKLEIGENDASRLIGSIIEKGISETPQNKPTPPPQLTVLPFPVARHRSHGPHWGPISSRKDANDDNEDDGEED DDDSIYSNPISAFAHPVKRKQKKGLDLSRWRELVPSDNSLEIDEVEKNRAGLKKTGKYRKDGEAVDHVENRKLLNDPFRASEVPMEVDIETDLSSSMPPA KVKESVTSVADMEINNRALSEMLKKREQLNQTVVSSSGFNSHGNEQGSKLLESEIDAENRSRLQSMSAEEIAEAQVEIMEKMNPELLNLLKKRGQEKLKK KNVSSSDEAVSSQVDSIPIENRLIKHSEISPHAGSERPEMMTTNISKDTKSGLDNNVLHDLSTTSGCLWNTWSERVEAVRGLRFSLEGTVIADEPDTGNI SSDNGLSADNVAERDFLRTEGDPGAAGYTIKEAVQLTRSVIPGQRALALHLLASVLDNAIHSIQQNKVGSTVSNANQVDKSDDWEAIWAFALGPEPELVL ALRMCLDDNHHSVVLACAKVIQSVLSCDLNETFFEISEKIATCEKDIFTAPVFRSKPDIDAGFLHGGFWKYNAKPSNIMAFSEDIVDDEIEGKHTIQDDI AVASQDFAAGLVRMGILHKMRYLLEADPSAPLEECIISILLGIARHSLTCANAIMKCQRLVNMVVHRFTMGDNIEVRPSKIKSVRLLKALAQSDKNNCIE LIKNGFVQAMTWHLYRYTSSLDYWLKSGKEICKLSSALMVEELRLWKACIHYGFCISCFSDIFPALCLWLNPPTFTKLQENNVLGEFASVSKEAYLVLEA LSRNLPNFYMQKHASNQMSDCAGDEQESWSWSFVTPMIDLALKWIASISDPYISKIFEWEKGNRSEFVFQDSSISSLLWVYSAVLHMLSTLLERLIPEDA LRLQGSGQHVPWLPEFVPKIGLGVVKNGFLSFIDELCHLRQHSNSETSLASVCCLHGLIRVSVSIDNLIQLAKSGVHSPPSQEYRFSGESKILEDGILKS SLVELKCVLNLFIKFVTSEWHSVQSIETFGRGGPTPGAGIGWGASVGGFWSMTVLLAQTDARMLTSMLEIFQNLSTTEVPTDEEMVFAMNMISSLLGVFL TIGPRDKPVMKKALDILLDVPVLKYLDFYTRRFLQLNERVKLFGWEYKEEDYVSFSNTLASHFKNRWLSVKRKLKATPEDNSKGKSSLETIHEDLDISDM TWQDNHLTSLTAEWAHQRLPLPLHWFLSPIATISNNKQGCLQSSSDTRNPTEHTHDTLEVAKGGLFFLLGLETMSSFLPTDAPSPVRFTPLIWKLHSLSV MLLSGMGVLEDDKSRDVYEALQNLYGQLLDESRSVRSAEHFLEDNVNVVPETGKKSALEFLRFQSEIHESYSTFLETLVEQFASISYGDIIFGRQVAVYL HRCTETPVRLAAWNGLANAHVLEILPPLEKCFAEAEGYLEPVEDNEGILEAYVKAWVSGALDRAATRGSMAFTLVLHHLSSFIFLFHANDKITLRNKLAK SLLRDYSKKQRHEFMLQGIMLELVCYYKLSSRLPEKQEGLPLQASDIEKRFEVLVEACDRDSSLLIEVEKLKSAFVKKQFVDRL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	0	1
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	1.73	0.9113
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	2.44	0.9155
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	2.64	0.9204
AT1G77010			Pentatricopeptide repeat (PPR)...		Potri.002G075200 [exp]	3.74	0.8860
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.008G173500 [exp]	4.69	0.8918
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082283 [exp]	5.47	0.8858
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	6.00	0.9076
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	6.32	0.9086
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	8.48	0.9021
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	11.22	0.8817

Compare expression of checked genes

Potri.009G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.