Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38430 716 / 0 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G02010 514 / 7e-178 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT5G05940 479 / 3e-163 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 440 / 1e-148 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT4G00460 417 / 4e-141 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT4G13240 403 / 7e-135 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G24620 402 / 2e-134 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT1G01700 397 / 6e-133 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT1G79860 382 / 6e-127 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 382 / 1e-125 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179742 [exp] 976 / 0 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 640 / 0 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G014100 [exp] 619 / 0 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.008G062000 [exp] 504 / 8e-173 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.006G092600 [exp] 496 / 5e-170 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 492 / 2e-168 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 490 / 2e-166 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.002G159700 [exp] 430 / 4e-146 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 424 / 1e-143 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023983 [exp] 749 / 0 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10025101 [exp] 742 / 0 AT4G38430 683 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10005644 [exp] 534 / 0 AT4G38430 520 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10021234 [exp] 534 / 0 AT4G38430 525 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Lus10009874 [exp] 493 / 2e-169 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 488 / 5e-167 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10022601 [exp] 490 / 2e-166 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10004676 [exp] 486 / 5e-166 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 488 / 1e-165 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10000399 [exp] 477 / 5e-163 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.009G140100.1 pacid=42772119 polypeptide=Potri.009G140100.1.p locus=Potri.009G140100 ID=Potri.009G140100.1.v4.1 annot-version=v4.1 ATGGGGAGTGTGTCTTCTGATGATGACGGTGGTGGTAGTGAGAGGTGCGGGAGCTATAGTTTGAGTGCCGACGTCAGCGAGTCGGAGAGCTGTACTAGTT CGAGTAATTTCTCGTGTCGGCGAGGGCTTGGTCGCGATGGTGGTTGTGCTTCGAGTTCGATGACGTCATCTCCGCGTCCGGTGGCTGGAGGTTTCTGTTT TCCGGCGCCGGTTATGGTTCCTGTTATTGGTGGTAAAGATGTGGTGGTCTGGGGCTCAAAGAATGAGAAACGAAGGGAGACTGATTTGTCTGAGGTTGAG ATGATGAAAGAAAGATTTGCCAAGCTTCTACTAGGAGAGGACATGTCTGGTGGTGGTAAAGGAGTCTGTACTGCACTTGCCATCTCAAATGCCATCACAA ATCTCTCTGCGACTGTTTTTGGCGAGTTGTGGAGGTTAGAGCCATTGTTGCCGCAAAAGAAGTCGATGTGGAAAAGGGAAATGGAATGGCTGTTATGTGT GAGTGATTCGATTGTTGAGCTTGTACCTTCGATGCAGCAATTTCCTGGTGGGGGAACTTATGAGGTTATGGCAACTAGACCACGCTCGGATTTATATGTG AATCTGCCCGCGCTCAAGAAGCTTGATGCTATGTTGATTAGTATGCTTGACGGGTTTTGTGAAACGGAGTTTTGGTATGTTGATCGGGGGATAGTTGTGG CTGATGGTGGTGATTGTGATGCCTATCCGTCGGGTATTTCTGGCGGGAGGCCTTCTATTAGGCAGGAAGAGAAATGGTGGTTGCCATGTCCAAAAGTGCC ACCAAATGGGTTGTCAGATGATGCAAGGAAGAGGTTGCAGCAGTGCAGAGATTGCACCAATCAGATATTGAAAGCAGCAATGGCTATTAATAGTAGCGTG CTAGTTGAGATGGAAATACCCACTGCTTACATGGAGACCTTGCCCAAGAATGGAAAACCTTGCCTCGGTGATATCATCTACCGCTACATAACCGCTGAGC AGTTCTCACCAGATCGCCTCCTCGATTGCCTTGACCTTTCAACAGAACATCATACTCTGGAAATAGCAAACAGGATCGAGGCAGCGGTGCATGTATGGAA GCAGAAAGATCATAAAAAACATACCCATAACATGAGAATTAAGCACTCGTCATGGGGCGGCAAGGTCAAGGGCTTTGTTACAGATTCGCATAAGAACCAG ATTTTGGCCCAACGAGCAGAAACTCTCCTACAGAGCTTAAGGCTTCGTTTCCCTGGCCTCCCACAAACAACTTTGGATATGAACAAGATTCAATATAACA AGGATGTCGGGCAGTCAATTCTCGAAAGCTACTCAAGAGTAATGGAGAGCTTGGCCTTCAACATTATGGCAAGGATAGATGATGTTATTTACGTAGATGA TGCAATAAAGCAATGTGCTGCAGCAGAATCGATGTCCCTCTTCAACAGAGGAGGATTAGGAGGTCTTCCCATCCAGAAGAGAATGTCTCCTAGCCCCTTC TCAATCCAACAAAGCCCTTTTGCCTCTCCATTTGCAACGCCTACGTATTGTGCTTCGACTCCAGTGTCCGGAAGTCCAGAAAGGGTGCCATCCTCCCTAA AGAGGGGCAAACCTAAGGAAGCACCTGATCGTAAGTTGGAAAAACCACTGTCATCTGACTTTGAGACGGTTTGGACATACACAGGCAACCTTAGTTCAAG AAGAGTTTCTGGAGATGCTCCTGAACGAGATTGA
AA sequence Show only first row Show all	>Potri.009G140100.1 pacid=42772119 polypeptide=Potri.009G140100.1.p locus=Potri.009G140100 ID=Potri.009G140100.1.v4.1 annot-version=v4.1 MGSVSSDDDGGGSERCGSYSLSADVSESESCTSSSNFSCRRGLGRDGGCASSSMTSSPRPVAGGFCFPAPVMVPVIGGKDVVVWGSKNEKRRETDLSEVE MMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEPLLPQKKSMWKREMEWLLCVSDSIVELVPSMQQFPGGGTYEVMATRPRSDLYV NLPALKKLDAMLISMLDGFCETEFWYVDRGIVVADGGDCDAYPSGISGGRPSIRQEEKWWLPCPKVPPNGLSDDARKRLQQCRDCTNQILKAAMAINSSV LVEMEIPTAYMETLPKNGKPCLGDIIYRYITAEQFSPDRLLDCLDLSTEHHTLEIANRIEAAVHVWKQKDHKKHTHNMRIKHSSWGGKVKGFVTDSHKNQ ILAQRAETLLQSLRLRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVMESLAFNIMARIDDVIYVDDAIKQCAAAESMSLFNRGGLGGLPIQKRMSPSPF SIQQSPFASPFATPTYCASTPVSGSPERVPSSLKRGKPKEAPDRKLEKPLSSDFETVWTYTGNLSSRRVSGDAPERD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.009G140100 [exp]	0	1
AT4G13710			Pectin lyase-like superfamily ...		Potri.001G052300 [exp]	2.82	0.8794
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	4.69	0.8517
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053640 [exp]	7.41	0.7891
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	10.77	0.7361
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	10.81	0.8152
AT1G60870		MEE9	maternal effect embryo arrest ...		Potri.016G004300 [exp]	12.00	0.7760
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Potri.008G132700 [exp]	16.61	0.8108	Pt-CEL1.3
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.006G034200 [exp]	18.89	0.7170
AT5G10990			SAUR-like auxin-responsive pro...		Potri.004G164300 [exp]	20.12	0.7433
AT3G11950		ATHST	TRAF-like superfamily protein ...		Potri.016G062900 [exp]	20.56	0.7897

Compare expression of checked genes

Potri.009G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.