Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35030 245 / 8e-75 Protein kinase superfamily protein (.1.2.3) AT1G21590 251 / 2e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 250 / 2e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 246 / 8e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 243 / 2e-72 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G65530 221 / 1e-65 Protein kinase superfamily protein (.1) AT5G18910 220 / 8e-65 Protein kinase superfamily protein (.1) AT3G05140 213 / 8e-63 RBK2 ROP binding protein kinases 2 (.1) AT1G20650 208 / 1e-61 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G18610 211 / 2e-61 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102400 [exp] 256 / 2e-76 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 256 / 5e-76 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 254 / 8e-76 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 255 / 1e-75 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 244 / 3e-72 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 239 / 4e-70 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G011700 [exp] 223 / 2e-66 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.002G019300 [exp] 229 / 9e-66 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.006G173700 [exp] 218 / 3e-63 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025103 [exp] 574 / 0 AT2G16750 238 / 7e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10023981 [exp] 558 / 0 AT1G21590 233 / 2e-68 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 263 / 1e-78 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 261 / 2e-78 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 261 / 5e-78 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 245 / 1e-72 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 245 / 2e-72 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 240 / 1e-70 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10017273 [exp] 228 / 9e-67 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10013566 [exp] 225 / 2e-66 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G140300.1 pacid=42772670 polypeptide=Potri.009G140300.1.p locus=Potri.009G140300 ID=Potri.009G140300.1.v4.1 annot-version=v4.1 ATGGCGGGGAAGGCAAGCAGAGAGTGGAAAGTTTTTCCACTCGTGAAATCGAAGGAAGAAAAGAAGAGGACAATTATTGTAGGCTTAAAGTCAGATAACT ATAGCAGAGAAATGCTCCTGCGTTTTCTCCATAAAGTTGTCAATCCAAGGGATAATGTGCTTGCTATACATGTTCAAGAACCATCTGATACTTTCGATCC AAACACCTTCTATATCCATGAAGATATCTGCAAGGCCAAGCAGGTCGATTTCCTAGTTAAGGTTTGCAATGGGGACTCCTACATTTCAGAATTAGGCTAT CAAGTACGCGTCAACTATGCAACAATCCTAGCAGTTGGACGCAGCCTTTCAGGGATCAGACAATCAGTCGTCAATGATTGCTTAAAAGAGTTGCCCCCAA CTTGCAGCTTTCTGGTGATGGATAAGTCTGGAAAAATCGCACTCCAGAGGCAAGGTACCTCTCAACAAGGCTCGATTTATGCACTCTTTCGACATCCTCT ATCGTCTTCATCAAAAAAAAGTTACTTTCATCAACAGAGAGCTGCCTCCCAGTTACGAAAATCATTGACTGTGCCATCTTCCTCAACAGCATCATCAATA CAGCAAACAGATATTACAGCTAGGAACAATATCAGGAAGGCAGTCCAGGTTCCAGACTTTTGGGCAGAAAAGGTGTCTCATGGATTGCTTATCCTGGAAG CTAAGGGACTTGTCAAGCATTTCAAATTTCAAGAGCTCAATTTAGCTACTAATAATTTCAGCCCTGAAATGGTGATTGGAGTAGGTGGGCACAGTAAAGT GTATCGAGCCAACCTCGTGGATGGTCAGGCTGTAGCTGTGAAAATCCTGAAAGAAACACATTTTCCAGCTGAGGATCTTCTCCACGAAGTGCGGATTCTA TCTGACGTAAAACATGAGAACATAATCCAGATAATTGGGTACTGCTACAGTAAGGAGATGCATGCAATTGTATATAATCTACTAATAGGTAGTTTAAAGC AAAATTTGAGACAACTCAAGTGGAATGAGCGGATGGGAGTTGCCGTTGGTGTAGCACAGGCACTTGAATACCTTCATCATTCTTTCAACCCTCCAATAAT TCATAGAGATGTGAAGTCATCTAACATCCTCCTCTCTGGCACTTGCCAGCCTCAACTTTCAGATTTTGGAGCAGCAATGGTAAACCAACCATCAAAACAA AATTCAGCAAGCACAAAGCCATTCAAAGTTGTTGGGACTTTTGGATACTTGGCTCCAGAGTACATGATGTATGGGAAAGTGGATGAGAAGGTTGATGTTT ACTCATATGGGGTTGTACTCCTGGAACTTATCACTGGGCAGGAGGCTATTCAAACAAACGAGGCAAATCATGAAAGCTTAGTTCTATGGGCAAGGTCTTT ACTAAACTCTGGTCTATGTGAACGTCTCATTGATCCCCACCTTAGTGGAGACTACAAGAGAGAAGAGATGGAAATCATGATTTCTGTAGCACGCCTTTGC CTTGTACACTCATCTTCTAGGAGGCCAACGATGAAAATGATATTGAGGCTATTTCAGGAGCCAGAATACTGGTTAAATATGCAGAGGGAGAGAGACAAGC TCCTCAACGCTAAGTCCGAAGAAGAAAAGTTCACCTGGAGAATGGACGACTCCACCTCGACTGTCAAAAGTACTCTGCCCGTGGATGATTCATACCATGA AATATTGCCATCTGAAGCACCGGATTAG
AA sequence Show only first row Show all	>Potri.009G140300.1 pacid=42772670 polypeptide=Potri.009G140300.1.p locus=Potri.009G140300 ID=Potri.009G140300.1.v4.1 annot-version=v4.1 MAGKASREWKVFPLVKSKEEKKRTIIVGLKSDNYSREMLLRFLHKVVNPRDNVLAIHVQEPSDTFDPNTFYIHEDICKAKQVDFLVKVCNGDSYISELGY QVRVNYATILAVGRSLSGIRQSVVNDCLKELPPTCSFLVMDKSGKIALQRQGTSQQGSIYALFRHPLSSSSKKSYFHQQRAASQLRKSLTVPSSSTASSI QQTDITARNNIRKAVQVPDFWAEKVSHGLLILEAKGLVKHFKFQELNLATNNFSPEMVIGVGGHSKVYRANLVDGQAVAVKILKETHFPAEDLLHEVRIL SDVKHENIIQIIGYCYSKEMHAIVYNLLIGSLKQNLRQLKWNERMGVAVGVAQALEYLHHSFNPPIIHRDVKSSNILLSGTCQPQLSDFGAAMVNQPSKQ NSASTKPFKVVGTFGYLAPEYMMYGKVDEKVDVYSYGVVLLELITGQEAIQTNEANHESLVLWARSLLNSGLCERLIDPHLSGDYKREEMEIMISVARLC LVHSSSRRPTMKMILRLFQEPEYWLNMQRERDKLLNAKSEEEKFTWRMDDSTSTVKSTLPVDDSYHEILPSEAPD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35030			Protein kinase superfamily pro...		Potri.009G140300 [exp]	0	1
					Potri.001G280604 [exp]	13.19	0.8786
AT5G05800			unknown protein		Potri.007G118701 [exp]	18.38	0.9333
					Potri.004G013800 [exp]	25.41	0.9254
AT5G05800			unknown protein		Potri.001G339400 [exp]	25.76	0.9330
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	27.42	0.9317
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	27.65	0.9329
					Potri.013G071200 [exp]	31.65	0.9323
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	32.31	0.9311
AT4G31560		HCF153	high chlorophyll fluorescence ...		Potri.003G203300 [exp]	33.04	0.8835
AT3G55700			UDP-Glycosyltransferase superf...		Potri.010G195600 [exp]	34.40	0.8214

Compare expression of checked genes

Potri.009G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.