Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CAO.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47450 423 / 7e-148 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) AT4G35450 57 / 5e-09 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT3G24530 56 / 3e-08 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT3G04710 53 / 2e-07 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G17390 53 / 2e-07 AKR2B ankyrin repeat-containing 2B (.1) AT2G03430 51 / 4e-07 Ankyrin repeat family protein (.1) AT5G66055 51 / 7e-07 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G53470 50 / 2e-06 ACBP1 acyl-CoA binding protein 1 (.1) AT3G57130 50 / 2e-06 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT4G27780 48 / 6e-06 ACBP2 acyl-CoA binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180766 [exp] 195 / 2e-62 AT2G47450 127 / 1e-36 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Potri.004G210100 [exp] 66 / 7e-12 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 66 / 7e-12 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.013G042300 [exp] 63 / 1e-10 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G185200 [exp] 61 / 6e-10 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 57 / 9e-09 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.005G054800 [exp] 54 / 8e-08 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G105800 [exp] 53 / 2e-07 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.007G060400 [exp] 53 / 2e-07 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023973 [exp] 484 / 8e-172 AT2G47450 391 / 2e-135 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Lus10025111 [exp] 66 / 3e-13 AT2G47450 55 / 4e-10 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Lus10026575 [exp] 69 / 1e-12 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1) Lus10013859 [exp] 69 / 1e-12 AT2G17390 427 / 1e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 66 / 2e-11 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10003260 [exp] 57 / 2e-08 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 54 / 9e-08 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10041853 [exp] 52 / 6e-07 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10021508 [exp] 49 / 1e-06 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10005910 [exp] 49 / 4e-06 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.009G140500.1 pacid=42772690 polypeptide=Potri.009G140500.1.p locus=Potri.009G140500 ID=Potri.009G140500.1.v4.1 annot-version=v4.1 ATGGACTCTCTCTTTGTTAACCAAGCTCTTTCACGCCTCAAGCTCTCTCCAAAACTCACAATCCCTTCTTACTTTTCCTATCAATCTCCTTTACACCTCA AACAAAACCATGGTAGAAAACCCTACAATTCCTTCACACTCTTTGCTATCCAAGACCAACAAGAAACACAAAACCCACTTCAAGAAACCACTCAAAACAT CGAAGACGACGAGTCGTATGGAGAAGTCAGCAAGATCATCGGAAGCAGAGCAGTTGAAGGTGGTAAAGGCATGGAGTACTTCATTGAGTGGAAAGACGGC CATACGCCCTCGTGGGTCCCATCAGATTTCATAGCTAAAGATGTGGTGGCCGAGTACGAGACGCCATGGTGGACAGCAGCCAAGAAGGCCGACTCGTCGG CTCTTAGTCAGATTCTATCGGAGAATGAAGATGAACGACGTGATGTTAATGCTGTGGATAGTGACGGACGCACAGCTTTGCTTTTTGTATCTGGGCTCGG CTCTGAGCCGTGTGTTAAGCTCCTAGCCGAAGCTGGAGCTGAACTGGATCATAGAGACAACAGTGGTGGCCTGACGGCTCTTCATATGGCAGCTGGCTAT GTTAAGCCAGGTGTCGTTAAGTTATTGGTTGACCTAGGTGCTGATCCTGAGGTGAAGGATGATAGAGGATTAACTCCCTTGGATTTGGCCAAGGAAATTT TAAGAGTGACCCCAAAAGGGAACCCAATGCAATTCGGGAGAAGATTGGGGTTAGAAAGTGTAATAAGAAACTTAGAGGAGGGAATATTCGAGTACGCTGA GGTACAGGAAATACTGGAGAAAAGAGGGAAAGGGAAGGACTTGGAGTATTTGGTAAAATGGAAGGATGGCAGTGATAATGAGTGGGTGAAAGCAAAGTTT ATAGGGGAGGATTTGGTGATGGATTTTGAGGCAGGGTTAGAGTATGCCGTGGCAAAGGGAGTGGTGGGTAAGAGGCTAGGTGATGATGGGAAGAATGAGT ATCTTGTGAAATGGACGGATATTGATGAGGCCACGTGGGAGCCTGAAGAGAATGTTGATCTTGATTTGATCAAGGAGTTTGAGGAGGGACAGATCAATGG AGTTGGAAGTGTTGAGGCCCAGTTGAGTAGTGATGGGCTATAA
AA sequence Show only first row Show all	>Potri.009G140500.1 pacid=42772690 polypeptide=Potri.009G140500.1.p locus=Potri.009G140500 ID=Potri.009G140500.1.v4.1 annot-version=v4.1 MDSLFVNQALSRLKLSPKLTIPSYFSYQSPLHLKQNHGRKPYNSFTLFAIQDQQETQNPLQETTQNIEDDESYGEVSKIIGSRAVEGGKGMEYFIEWKDG HTPSWVPSDFIAKDVVAEYETPWWTAAKKADSSALSQILSENEDERRDVNAVDSDGRTALLFVSGLGSEPCVKLLAEAGAELDHRDNSGGLTALHMAAGY VKPGVVKLLVDLGADPEVKDDRGLTPLDLAKEILRVTPKGNPMQFGRRLGLESVIRNLEEGIFEYAEVQEILEKRGKGKDLEYLVKWKDGSDNEWVKAKF IGEDLVMDFEAGLEYAVAKGVVGKRLGDDGKNEYLVKWTDIDEATWEPEENVDLDLIKEFEEGQINGVGSVEAQLSSDGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.009G140500 [exp]	0	1	Pt-CAO.3
AT3G54210			Ribosomal protein L17 family p...		Potri.016G143100 [exp]	2.82	0.9833
AT5G52960			unknown protein		Potri.012G033700 [exp]	3.74	0.9778
AT1G17100			SOUL heme-binding family prote...		Potri.001G379000 [exp]	4.69	0.9594
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Potri.001G091300 [exp]	5.83	0.9509
AT3G25810			Terpenoid cyclases/Protein pre...		Potri.017G041700 [exp]	6.00	0.9645
AT3G15190			chloroplast 30S ribosomal prot...		Potri.001G396600 [exp]	6.00	0.9766
AT1G16080			unknown protein		Potri.003G185501 [exp]	8.12	0.9700
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.002G016401 [exp]	9.89	0.9698
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.010G127300 [exp]	10.48	0.9702
AT3G54210			Ribosomal protein L17 family p...		Potri.006G113500 [exp]	12.32	0.9706

Compare expression of checked genes

Potri.009G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.