Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22800 1437 / 0 EMB86, EMB263, EMB1030 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) AT1G50200 477 / 4e-152 ACD, ALATS Alanyl-tRNA synthetase (.1.2) AT1G49930 52 / 8e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094300 [exp] 477 / 3e-152 AT1G50200 1535 / 0.0 Alanyl-tRNA synthetase (.1.2) Potri.007G070250 [exp] 50 / 3e-06 AT1G50200 266 / 1e-82 Alanyl-tRNA synthetase (.1.2) Potri.010G024900 [exp] 44 / 0.0002 AT3G16565 338 / 2e-118 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022640 [exp] 1520 / 0 AT5G22800 1455 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10003337 [exp] 877 / 0 AT5G22800 855 / 0.0 EMBRYO DEFECTIVE 86, EMBRYO DEFECTIVE 263, EMBRYO DEFECTIVE 1030, Alanyl-tRNA synthetase, class IIc (.1) Lus10010210 [exp] 460 / 3e-146 AT1G50200 1511 / 0.0 Alanyl-tRNA synthetase (.1.2) Lus10017408 [exp] 459 / 2e-138 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Lus10000503 [exp] 44 / 0.0002 AT3G16565 269 / 2e-91 alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF01411 [poplar] [flax] tRNA-synt_2c tRNA synthetases class II (A) CL0040 [poplar] [flax] PF02272 [poplar] [flax] DHHA1 DHHA1 domain CL0094 [poplar] [flax] Peptidase_ME PF07973 [poplar] [flax] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence Show only first row Show all	>Potri.009G141300.6 pacid=42771657 polypeptide=Potri.009G141300.6.p locus=Potri.009G141300 ID=Potri.009G141300.6.v4.1 annot-version=v4.1 ATGGGTGGCCTGAAACTGCCACCACAAACTCTACACGGTATCCATGGCGGGAGGAGACCTCTCACTGCTCCATCTTCAAAACCCTCCTTCACAATTCAAC CAAATTACAGCTCTTCCATTTCCACTGGGAATTTTGCAGGTTTTACTACAAGAAATGTTGCCCTTTTTTCACCCAGTATATTTCCGTGTGGATATTTCAT TTTGGGAGGAGCCAGGGAAAGGCGGTTTGGTGCAAGGAATACACAAGCGTCAGTACAGCCGGTGACTGAGGAATTGGTGGAGGATAAGACTAAGGAAAAC CCTGTAAGTGGGGATGCTATACGTCGTCGTTTCCTTGAGTTTTATGCTTCCCGTAGCCATAAGGTTCTTCCGAGTGCTTCTCTTGTGCCAGATGATCCCA CTGTTCTTCTGACTATCGCAGGAATGCTTCAGTTCAAGCCTATATTCCTCGGGAAGGCTCCCAGACAAGTGCCTCGAGCTACAACTGCACAAAAGTGTAT TCGTACAAATGATGTGGAGAATGTTGGCCGAACAACTCGACATCATACATTCTTTGAGATGCTTGGAAACTTCAGTTTTGGAGATTACTTCAAGAAAGAA GCTATTAAATGGGCATGGGAGCTTTCGACCAAGGAATTTGGACTGCCAGCTGACAGGTTATGGGTTAGTGTTTATGAAGATGACGATGAAGCTTTTGAAA TATGGCATGATGAGGTGGGTGTTCCTGTTGAACGTATAAAGAGAATGGGTGAAGAAGACAATTTTTGGACCAGTGGTGCCACTGGACCTTGTGGTCCATG CTCCGAGCTTTATTATGATTTCCATCCTGAAAGGGGATATAAGAATACAGATCTTGGAGATGATAGTAGGTTTATAGAGTTCTACAACCTGGTTTTCATG CAATACAATAAAATGGATGATGGATCACTTGAACCCTTAAAACAAAAGAATATAGATACAGGTCTTGGCCTGGAGCGTTTGGCTCGCATCCTTCAAAAGG TTCCAAACAATTATGAGACTGACTTGATTTATCCAATTATAGAGAAGGCCGCAGAATTGGCAAATATATCATATGCTCTAGCCGATGATCGAACAAAAAT GAACCTTAAAATTATAGGAGATCATTTGCGTGCAATTGTATATCTTATATCAGATGGAGTGCTTCCATCAAATATTGGTAGAGGCTATGTGGTTCGTCGG CTTATCAGAAGAGCTGTTCGTACTGGCAGATTGCTTGGTGTAAAGGGGGGTGGAGAGGATGGAGTGTTTTTACCAGCCATTGCAGAAAAAGTAATAGAAT TGAGCCCCCATATTGATCCAGATGTAAAGGCTAGAGGACATAGCATTCTTGATGAGTTGCAAAGGGAGGAACTTCGTTTTGTGCAGACATTAGAGAGAGG AGAAAAGCTGCTTGACCAAATGCTTGCAGAAGCACTATTAAATGCTCAAAAAAGTGAAACCCTACCTTGCTTATCTGGGAAAGATGTATTTCTACTGTAT GACACTTTTGGGTTTCCAGTGGAGATAACCACAGAAGTTGCTGAAGAACAAGGTGTCAAGATAGATATGGATGGTTTTGAAGTTGAGATGGAAAACCAAA GGCGTCAATCTCAGGCTGCACACAATGTTGTTAAACTTGCAGTTGAAAATGGAGGGGATCTTGCTGAAAATGTTCATGATACTGAATTTCTAGGATATGA CACACTTTCTGCAAGAGCAGTAGTTGAAAGCCTCTTGTTAAATGGGAAATCAGTGATACAGGTTTCTGAAGGAAGTGAAGTAGAAGTTTTGCTGAACAAG ACACCATTTTATGCTGAATCTGGTGGTCAGATTGGGGACCATGGATTTCTATATGTTACACAAGATCAAAGCAAACAGACAGCTGTTGTGGAAATTAAAG ATGTTCAAAAATCTCTAGGTAGTGTATTTGTTCATAAGGGTACTATTAGAGAAGGAGTTCTAGAAGTTGGAAGAGAAGTGGAAGCTGCAGTAGATGCAAA ATTGAGGCAGCGGGCTAAGGTTCACCATACTGCTACTCATTTGCTACAATCTGCACTCAAGAAAGTTATTGGCCAAGAAACATCACAAGCTGGTTCACTG GTTGCTTTTGATCGTCTCAGATTTGATTTCAACTTCCATCGACCACTTCATGACAGTGAACTGGAGGAAATTGAAAACTTGATAAATGGATGGATTGGGG ATGGAACACTTCTTCAGACTAAGGTGATGTCACTTACTGATGCAAAAGAAGCTGGGGCCATTGCAATGTTTGGAGAAAAGTATGGGGAGCAGGTGAGAGT CGTAGAAGTTCCTGGTGTGTCCATGGAACTTTGTGGTGGAACCCATGTGAGCAACACTTCTGAAATACGTGCCTTCAAGATCATATCTGAACAGGGCATT GCATCTGGAATCAGACGTATAGAAGCTGTGGCTGGTGAAGCTTTCATTGAATACATTAATGCAAGAGATTCCCAGATGAAACTCTTATGCTCCACTCTCA AAGTGAAAGCAGAAGAGGTGACAACGAGGGTGGATAATCTCTTAGAGGAGTTAAGGACGGTAAGAAACGAAGTTTCTGCTTTGCGTGCAAAAGCAGCAGT GTACAAAGCATCAATGATTGCTAGCAAGGCATTCTCAGTGGGAACTTCGAAAACAATCAGGGTACTAGTCGAGTCCATGGATGATTTTGATGCTGATGCA CTCAAGAGTGCAGCTGAATATCTAATGGATACACTGCAAGACCCAGCAGCTATAATTTTGGGCTCCTGTCCAGATGAAGGTAAGGTGAGTTTGGTTGCCG CATTCACTCCAGGAGTAGTTGATATAGGTATTCAGGCAGGGAAATTTATAGGACCTATAGCGAAGTTGTGTGGCGGAGGAGGTGGTGGCAGGCCTAATTT TGCTCAGGCAGGAGGGAGGAAGCCTGAGAACTTGACAAATGCCCTGGAAAAAGCTCGGACAGATCTTATTTTGATTCTAACTGAGAAGGCAAACTGA
AA sequence Show only first row Show all	>Potri.009G141300.6 pacid=42771657 polypeptide=Potri.009G141300.6.p locus=Potri.009G141300 ID=Potri.009G141300.6.v4.1 annot-version=v4.1 MGGLKLPPQTLHGIHGGRRPLTAPSSKPSFTIQPNYSSSISTGNFAGFTTRNVALFSPSIFPCGYFILGGARERRFGARNTQASVQPVTEELVEDKTKEN PVSGDAIRRRFLEFYASRSHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKAPRQVPRATTAQKCIRTNDVENVGRTTRHHTFFEMLGNFSFGDYFKKE AIKWAWELSTKEFGLPADRLWVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYDFHPERGYKNTDLGDDSRFIEFYNLVFM QYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGYVVRR LIRRAVRTGRLLGVKGGGEDGVFLPAIAEKVIELSPHIDPDVKARGHSILDELQREELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFLLY DTFGFPVEITTEVAEEQGVKIDMDGFEVEMENQRRQSQAAHNVVKLAVENGGDLAENVHDTEFLGYDTLSARAVVESLLLNGKSVIQVSEGSEVEVLLNK TPFYAESGGQIGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVDAKLRQRAKVHHTATHLLQSALKKVIGQETSQAGSL VAFDRLRFDFNFHRPLHDSELEEIENLINGWIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVSNTSEIRAFKIISEQGI ASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEVTTRVDNLLEELRTVRNEVSALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADA LKSAAEYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGVVDIGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLTNALEKARTDLILILTEKAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	0	1
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.011G140100 [exp]	1.00	0.9900
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	1.41	0.9827
AT1G75730			unknown protein		Potri.005G238800 [exp]	3.16	0.9708
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	3.16	0.9749
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	3.46	0.9758
AT2G45270		GCP1	glycoprotease 1 (.1)		Potri.014G067800 [exp]	3.87	0.9659
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.001G113000 [exp]	4.24	0.9713
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	4.24	0.9732
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	4.58	0.9789
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	8.77	0.9700

Compare expression of checked genes

Potri.009G141300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.