Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17040 315 / 3e-108 NAC ANAC036 NAC domain containing protein 36 (.1) AT2G02450 193 / 4e-59 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT5G39820 177 / 1e-53 NAC ANAC094 NAC domain containing protein 94 (.1) AT3G17730 165 / 7e-50 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G65910 172 / 2e-49 NAC ANAC028 NAC domain containing protein 28 (.1) AT4G27410 164 / 4e-49 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G26870 168 / 5e-49 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G69490 161 / 4e-48 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT2G43000 160 / 7e-48 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT5G62380 160 / 8e-47 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181900 [exp] 285 / 5e-98 AT2G17040 139 / 4e-41 NAC domain containing protein 36 (.1) Potri.005G103200 [exp] 252 / 7e-84 AT2G17040 249 / 6e-83 NAC domain containing protein 36 (.1) Potri.003G046700 [exp] 191 / 2e-58 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.004G230800 [exp] 184 / 1e-55 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.017G082000 [exp] 174 / 9e-52 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G166200 [exp] 170 / 3e-51 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.004G126901 [exp] 169 / 1e-49 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.007G014400 [exp] 168 / 2e-49 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.011G123300 [exp] 167 / 2e-49 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022636 [exp] 305 / 5e-104 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10003333 [exp] 295 / 9e-100 AT2G17040 293 / 2e-99 NAC domain containing protein 36 (.1) Lus10025118 [exp] 260 / 5e-86 AT2G17040 258 / 1e-85 NAC domain containing protein 36 (.1) Lus10023966 [exp] 259 / 8e-86 AT2G17040 268 / 3e-89 NAC domain containing protein 36 (.1) Lus10008419 [exp] 187 / 3e-56 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003367 [exp] 187 / 2e-55 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008420 [exp] 184 / 2e-55 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10023208 [exp] 181 / 5e-55 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008897 [exp] 177 / 9e-54 AT2G02450 315 / 5e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10037178 [exp] 178 / 2e-52 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.009G141600.1 pacid=42772903 polypeptide=Potri.009G141600.1.p locus=Potri.009G141600 ID=Potri.009G141600.1.v4.1 annot-version=v4.1 ATGGCTGAAATGGCATTAAAGCTTGATCTTCCAGGCTTCCGTTTCCACCCAACTGAAGAGGAACTTCTTGATTTCTACCTTAAAAATATAGTTTTTGGTA AAAAAATGCGTCTTGATGTTATTGGCTACCTCAACATCTATCGTCATGATCCTTGGGACTTGCCTGGATTGTCAAATGTTGGGGAAAGGGAGTGGTATTT TTTTGTGCCTAGAGACAGGAAGCATGGTAGTGGAGGAAGGCCTAATAGGACTACTCAAAATGGGTTTTGGAAAGCCACTGGTTCTGACCGGAAAATTGTG AGCTTATCGGACCCAAAAAGGATGATCGGATTGAGAAAGACTCTTGTTTTCTATAAGGGAAGAGCACCAAGAGGGAACAAGACTGATTGGGTCATGAACG AGTATCGCCTGCCTGAATATTCATGCCCCTTGCCCAAGGACATAGTCTTGTGCAAGATATACAGGAAGGCAACTTCGTTGAAAGTTCTAGAGCAAAGGGC AGCAATGGAAGAAGAAATGAAGACAATTCATGCGTCTCCATCTTCATCCCCACCACCATCATCTTTGGACACCATGTCATTTTGCAGTCAACTAGAAGAT CCAGTGCCACCGATATTAATGCCTGCGCAAAATTTGGTTTTCAAGAAAGAAATAGAAGACAACAACAATATTAGATATGAAAAACCAAACGAGATTAAAA GGCCAAGTCTCCATTTACCTATGGGGAAGGACATGTTACCAGAGCTCCAAGTTCCCAGCAAATTGAGCATGGAGTGGAACCAAGATCCCATCTGGTCCCT AAATAGTCCTTGGATTCAAAATTTTGCCCATTATGCAGACATTTTGAATTTCTAA
AA sequence Show only first row Show all	>Potri.009G141600.1 pacid=42772903 polypeptide=Potri.009G141600.1.p locus=Potri.009G141600 ID=Potri.009G141600.1.v4.1 annot-version=v4.1 MAEMALKLDLPGFRFHPTEEELLDFYLKNIVFGKKMRLDVIGYLNIYRHDPWDLPGLSNVGEREWYFFVPRDRKHGSGGRPNRTTQNGFWKATGSDRKIV SLSDPKRMIGLRKTLVFYKGRAPRGNKTDWVMNEYRLPEYSCPLPKDIVLCKIYRKATSLKVLEQRAAMEEEMKTIHASPSSSPPPSSLDTMSFCSQLED PVPPILMPAQNLVFKKEIEDNNNIRYEKPNEIKRPSLHLPMGKDMLPELQVPSKLSMEWNQDPIWSLNSPWIQNFAHYADILNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.009G141600 [exp]	0	1
AT3G18670			Ankyrin repeat family protein ...		Potri.015G125000 [exp]	1.41	0.9525
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.016G076100 [exp]	2.00	0.9465
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147400 [exp]	2.44	0.9397
					Potri.012G014800 [exp]	3.16	0.9139
					Potri.012G124788 [exp]	4.24	0.8958
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.012G010445 [exp]	4.89	0.9165
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.004G220100 [exp]	7.48	0.8832
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	11.40	0.8949
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.013G106200 [exp]	11.53	0.9036
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G027600 [exp]	13.11	0.8496

Compare expression of checked genes

Potri.009G141600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.