Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12500 365 / 4e-128 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT4G01700 281 / 1e-95 Chitinase family protein (.1) AT1G02360 269 / 5e-91 Chitinase family protein (.1) AT1G05850 168 / 6e-51 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G16920 165 / 3e-49 ATCTL2 chitinase-like protein 2 (.1) AT2G43610 160 / 2e-48 Chitinase family protein (.1) AT3G54420 156 / 1e-46 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43620 155 / 4e-46 Chitinase family protein (.1) AT2G43590 152 / 4e-45 Chitinase family protein (.1) AT2G43570 138 / 7e-40 CHI "chitinase, putative", chitinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141700 [exp] 454 / 2e-163 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 436 / 6e-156 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 340 / 4e-118 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 328 / 1e-113 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 316 / 6e-109 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 290 / 3e-99 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.002G186500 [exp] 287 / 3e-98 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.004G182100 [exp] 266 / 1e-88 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.010G141600 [exp] 173 / 7e-53 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041830 [exp] 323 / 1e-111 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 316 / 9e-109 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10009968 [exp] 288 / 2e-98 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10038026 [exp] 287 / 5e-98 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10041831 [exp] 180 / 4e-58 AT3G12500 192 / 1e-61 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10000193 [exp] 179 / 9e-58 AT3G12500 191 / 2e-61 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10037430 [exp] 172 / 4e-52 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041278 [exp] 171 / 5e-52 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037737 [exp] 167 / 2e-50 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10010862 [exp] 164 / 2e-50 AT2G43590 262 / 1e-88 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [poplar] [flax] Lysozyme PF00182 [poplar] [flax] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Potri.009G142150.1 pacid=42771521 polypeptide=Potri.009G142150.1.p locus=Potri.009G142150 ID=Potri.009G142150.1.v4.1 annot-version=v4.1 ATGCCCTGGCAAGGGATTCTACACTTACAATGCCCTGGCAAGGGATTCTACACTTACAATGCTTTCATCTCAGCTGCCAATGCCTTCTCTGGCTTTGGCA CTACTGGTGATGCTAACACTCGTAAAAGGGAGATCGCTGCTTTCTTGGGCCAAACCTCTCATGAAACTACTGGAGGGTGGCAAACTGCACCTGATGGTGC ATACGCTTGGGGATATTGCTTTGTCAAGGAACAAAATCCTGGAACTTATTGTTCTCCAAGTTCCACATATCCATGTGCTGGTGGCAAGCAATATTATGGC AGAGGTCCTGTCCAGCTTTCATGGAACTACAACTACGGGCAGTGTGGAAAAGCTATAGGAGTGGATCTATTAAACAATCCTGACCTTGTTGCAACCGATC CAGTAATTTCCTTCAAGACAGCAATTTGGTTTTGGATGACAGCACAGTCTCCAAAGCCCTCATGCCACAGTGTCATCACTGGGAATTGGTCACCTTCCGG TGCTGATTCGGCAGCTGGTCGGGTTCCAGGCTACGGTGTGTTAACAAACATTATCAATGGCGGGCTTGAATGTGGTATGGGGTGGAAGCAACAGGTGGAG GATCGTATTGGGTTCTACAAGAGGTACTGTGACTTGCTTGGAGTTGGATATGGAAACAATCTGGACTGCTACAACCAAAAGTCATTTGCAAATGGACTCT TGGACTTGGTCGACTCCATGTAA
AA sequence Show only first row Show all	>Potri.009G142150.1 pacid=42771521 polypeptide=Potri.009G142150.1.p locus=Potri.009G142150 ID=Potri.009G142150.1.v4.1 annot-version=v4.1 MPWQGILHLQCPGKGFYTYNAFISAANAFSGFGTTGDANTRKREIAAFLGQTSHETTGGWQTAPDGAYAWGYCFVKEQNPGTYCSPSSTYPCAGGKQYYG RGPVQLSWNYNYGQCGKAIGVDLLNNPDLVATDPVISFKTAIWFWMTAQSPKPSCHSVITGNWSPSGADSAAGRVPGYGVLTNIINGGLECGMGWKQQVE DRIGFYKRYCDLLGVGYGNNLDCYNQKSFANGLLDLVDSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142150 [exp]	0	1
AT4G16260			Glycosyl hydrolase superfamily...		Potri.010G142800 [exp]	1.73	0.8446	HGN1.1
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G141700 [exp]	2.44	0.8776	Pt-CHIA5.2
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G102400 [exp]	5.83	0.7913
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093833 [exp]	7.93	0.7881
AT4G37180	GARP		Homeodomain-like superfamily p...		Potri.005G134600 [exp]	13.41	0.7912
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107600 [exp]	13.71	0.7158	Pt-OLP.6
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.018G146200 [exp]	16.00	0.7919
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Potri.001G187700 [exp]	18.76	0.8194
AT3G63240			DNAse I-like superfamily prote...		Potri.005G212700 [exp]	23.02	0.8050
					Potri.010G115900 [exp]	25.65	0.8106

Compare expression of checked genes

Potri.009G142150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.