Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17070 175 / 1e-53 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 159 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 156 / 3e-46 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 91 / 3e-21 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 84 / 2e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 84 / 2e-18 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 71 / 4e-14 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 65 / 6e-12 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76210 62 / 3e-11 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182400 [exp] 440 / 4e-157 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 273 / 1e-91 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 257 / 5e-85 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 241 / 9e-79 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 235 / 2e-76 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 234 / 3e-76 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 234 / 5e-76 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 187 / 8e-58 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 177 / 4e-54 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025126 [exp] 181 / 1e-55 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 180 / 2e-55 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 176 / 6e-54 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 176 / 7e-54 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 175 / 2e-53 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 174 / 3e-53 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 174 / 6e-53 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 173 / 2e-52 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 171 / 4e-52 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 167 / 3e-50 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.009G142500.1 pacid=42772273 polypeptide=Potri.009G142500.1.p locus=Potri.009G142500 ID=Potri.009G142500.1.v4.1 annot-version=v4.1 ATGGCTCTCCACCATGCTCGCTCTAACAGCTTGCCTTCTAGGCCACATCCTCTATCTTCACAAATCGATGAGCATTTCAGCAGATTGAATGCTTCTCAAG TAATCTCCTCCTCTTCTTCATCATCATCATCTATATGCCACAAAGTAAGTTGCCTTCAAGATTTGCATGATTGTGTTGATAAGTTGATTCTGCTTCCCCT CACTCAAAAATCTTTAGCCCAAGAACAGAATGAGAAATGGGTCGATGACGTATTGGACGGATCCCTTAGAGTCTTGGATGTCTGTAGCATGGCTACAGAT GCCTTGTTGCAAACAAAGGAATGTGCTCAGGAACTTCAATCAATCATGAGGAGAAGAAGGGGAAATGAAATTGGAGTCTCGAGCGAGATTAAGAAATACT TAACCTCTAGGAAGGTGGTGAAAAATACAATCCACAAGGCCTTGAGGGGTTTGAAATATTTGGAGAATAAATCCTCACTCTCTCCCTTCAACAAAGACCA TGAAGCTGTAGCTGTAGTTAGTATGCTAAAAGAGGTGGAAGCAGTCACTCTCACTGTGCTTGAATCTCTCCTGACTCTCATCTCAGGTGGGGCAAAAGCA CAATCAAAGCTAAGTGGATGGTCCTTGGTGTCCAAGCTAATGCATCACAAAAGAATAGCTTGTGAGACAGAGGAAACAGAAGTGAATGAATTTGAAAAAC TGGACTCTGCATTGCACACTCTCATTTATCAGAAGACCAGTAAATCTGATAACACAGGGTCTCTTGAGAATGTGCAGCAGCAGCTCAAAGATTTCGACTT GTGCAATCAAGAACTTGAAGAAGGACTCGAAAACCTTTACAGGCGTTTGATCAAAACTAGAGTCTCTCTTCTCAACACCTTTGTAAACTAG
AA sequence Show only first row Show all	>Potri.009G142500.1 pacid=42772273 polypeptide=Potri.009G142500.1.p locus=Potri.009G142500 ID=Potri.009G142500.1.v4.1 annot-version=v4.1 MALHHARSNSLPSRPHPLSSQIDEHFSRLNASQVISSSSSSSSSICHKVSCLQDLHDCVDKLILLPLTQKSLAQEQNEKWVDDVLDGSLRVLDVCSMATD ALLQTKECAQELQSIMRRRRGNEIGVSSEIKKYLTSRKVVKNTIHKALRGLKYLENKSSLSPFNKDHEAVAVVSMLKEVEAVTLTVLESLLTLISGGAKA QSKLSGWSLVSKLMHHKRIACETEETEVNEFEKLDSALHTLIYQKTSKSDNTGSLENVQQQLKDFDLCNQELEEGLENLYRRLIKTRVSLLNTFVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	0	1
					Potri.001G218201 [exp]	2.44	0.8312
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	3.16	0.8345	SAP.1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	8.48	0.8063	COMT1,Pt-OMT1.2
AT3G05390			unknown protein		Potri.004G232200 [exp]	10.24	0.7476
AT1G67750			Pectate lyase family protein (...		Potri.010G051800 [exp]	10.95	0.7615
AT3G62720		ATXT1, XXT1	XYG XYLOSYLTRANSFERASE 1, xylo...		Potri.010G025100 [exp]	18.46	0.7603
					Potri.002G048450 [exp]	19.59	0.7916
AT4G17260			Lactate/malate dehydrogenase f...		Potri.003G111201 [exp]	27.62	0.7782
AT5G57510			unknown protein		Potri.018G006800 [exp]	29.39	0.7035
AT1G02810			Plant invertase/pectin methyle...		Potri.002G202600 [exp]	37.46	0.7520

Compare expression of checked genes

Potri.009G142500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.