Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17080 205 / 8e-65 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 199 / 2e-62 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 185 / 3e-57 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 185 / 4e-57 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 128 / 5e-35 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 105 / 4e-26 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 100 / 2e-24 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 87 / 9e-20 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 88 / 1e-19 Arabidopsis protein of unknown function (DUF241) (.1) AT1G76210 81 / 7e-18 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182550 [exp] 404 / 9e-143 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 266 / 2e-88 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 259 / 1e-85 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 252 / 5e-83 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 250 / 4e-82 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142400 [exp] 243 / 3e-79 AT2G17080 202 / 4e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142600 [exp] 243 / 3e-79 AT2G17080 202 / 6e-64 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 184 / 2e-56 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 182 / 9e-56 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025126 [exp] 235 / 1e-76 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 229 / 4e-74 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 228 / 1e-73 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 226 / 6e-73 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 225 / 1e-72 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 223 / 1e-71 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 219 / 3e-70 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 218 / 8e-70 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 213 / 7e-68 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014449 [exp] 213 / 8e-68 AT2G17080 213 / 6e-69 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.009G142700.1 pacid=42771393 polypeptide=Potri.009G142700.1.p locus=Potri.009G142700 ID=Potri.009G142700.1.v4.1 annot-version=v4.1 ATGTCAACAGATGGAAAGCACACAGAATTGAATCAATATTTTCAGCCATCAAAACTTCTTTTCTACAAGAAAGAAATAAAAATGGCTGCCTCCCCCGTCC GTCAGAAAACTAGCTTCCATGCTCGATCCAACAGTCTACCCTCTAGACCACATCCAATCATTTCGGAATTTGATGAGAATATTTGCAGAGTAAGAGATTC ACAGGCCACCTCTAAATCATCTTCATCATCATCAATAGGACACAAACTAAGTAGCCTTCAGTATTTGTATGATTCTGTTGATAAGTTCCTACAACTGCCA CTTACCCAACAAGGCTTGGCACAACAACGCAATCAGAAATGTGTCGATGAGCTCCTAGAGGGATCTCTCAGGCTCTTGGATACGTGCAACTCTACCCAGG ATGCACTGTTGCAATCAAAAGAATTCATTCGTGAGCTTCAATCTGTTATTCGCAGAAGACAAGGAGGCGTTGACAGCGAGATCAGGAAATACATTGCATC CAGGAAAGTAGTAAAGAAGTCAATAAAAAAGGCCTTGAGGAACTTGAAGGGCATGGAAAACAGGCGCACCTTCTCTAATGAAGAGTACCCTGAGATTATC ATGTTAAGAGAGGTTGAGTCCATCAGTCTTGCCGTGTTCGAATCATTACTATCATTCATTTCCGAACCAAAGTCACAAGCAAAGAAAAGCGGCTGGTCAT TGGTTTCCAAGCTGATGAACCACCACAGAATAGCATGTGAGGAAGAAGAAACAAATGAGATTGGATTTTCAATGGCTGATTCTGCTTTACAATCTCTTAT CAGTTGCAAAACAGATAAGATGATGGATGTGCAAAAGAAGCTAAACAATTTGGAGTTGTGCATTGAAGATCTTGAAGATGGAATTGATGGCATCTTTAGG CGCATGATCAAAACTAGAGCCTCCTTTCTCAATATTTTCAGTTAG
AA sequence Show only first row Show all	>Potri.009G142700.1 pacid=42771393 polypeptide=Potri.009G142700.1.p locus=Potri.009G142700 ID=Potri.009G142700.1.v4.1 annot-version=v4.1 MSTDGKHTELNQYFQPSKLLFYKKEIKMAASPVRQKTSFHARSNSLPSRPHPIISEFDENICRVRDSQATSKSSSSSSIGHKLSSLQYLYDSVDKFLQLP LTQQGLAQQRNQKCVDELLEGSLRLLDTCNSTQDALLQSKEFIRELQSVIRRRQGGVDSEIRKYIASRKVVKKSIKKALRNLKGMENRRTFSNEEYPEII MLREVESISLAVFESLLSFISEPKSQAKKSGWSLVSKLMNHHRIACEEEETNEIGFSMADSALQSLISCKTDKMMDVQKKLNNLELCIEDLEDGIDGIFR RMIKTRASFLNIFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17080			Arabidopsis protein of unknown...		Potri.009G142700 [exp]	0	1
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.006G242100 [exp]	6.55	0.7847
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	8.71	0.7768
AT2G16750			Protein kinase protein with ad...		Potri.004G175100 [exp]	17.20	0.7179
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	19.20	0.7629	LON.1
AT5G05340			Peroxidase superfamily protein...		Potri.016G132900 [exp]	23.97	0.7306	Pt-PRX1.14
AT5G06280			unknown protein		Potri.006G205200 [exp]	36.87	0.6931
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	51.76	0.6928
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.019G131300 [exp]	79.21	0.6858
AT4G23030			MATE efflux family protein (.1...		Potri.012G133500 [exp]	80.23	0.6644
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G054700 [exp]	87.61	0.6824

Compare expression of checked genes

Potri.009G142700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.