Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35250 642 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18660 62 / 2e-10 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32100 54 / 7e-08 ATPRR1 pinoresinol reductase 1 (.1) AT1G16720 48 / 6e-06 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT5G02240 46 / 1e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G13660 46 / 3e-05 ATPRR2 pinoresinol reductase 2 (.1) AT2G37660 42 / 0.0003 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183100 [exp] 688 / 0 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G204900 [exp] 69 / 1e-12 AT5G18660 610 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G000400 [exp] 54 / 1e-07 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.001G133300 [exp] 51 / 5e-07 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.007G003500 [exp] 50 / 2e-06 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.003G100200 [exp] 47 / 8e-06 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.002G147702 [exp] 45 / 6e-05 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G086800 [exp] 45 / 6e-05 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 42 / 0.0006 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003328 [exp] 634 / 0 AT4G35250 653 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022632 [exp] 624 / 0 AT4G35250 640 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012145 [exp] 59 / 1e-09 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10037912 [exp] 58 / 4e-09 AT5G18660 577 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038638 [exp] 58 / 5e-09 AT5G18660 574 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012143 [exp] 54 / 6e-08 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10010403 [exp] 51 / 7e-07 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10007599 [exp] 48 / 1e-05 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10033322 [exp] 46 / 3e-05 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10004028 [exp] 46 / 4e-05 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.009G143000.2 pacid=42771613 polypeptide=Potri.009G143000.2.p locus=Potri.009G143000 ID=Potri.009G143000.2.v4.1 annot-version=v4.1 ATGGCATGCAAACCACCAACTCAGCTAGCAACCCCAGGAAAAATCCATCGCCACCGTAAATTCACCGCCACATCCACAACTAACCCCTTCTCCTGGCAGG CAACAGGGGCAGTGAATTTAGGACCAGGGACTCCTGTTAGGCCAACTAGTATATTAGTTGTAGGAGCCACTGGTACTTTAGGCAGGCAAATTGTTAGAAG AGCCCTTGATGAAGGTTATGATGTTAGGTGCCTTCTTAGACCAAGACCTGCTCCTGCTGACTTCCTTCGTGATTGGGGTGCCACTGTTGTCAATGCAGAT CTTAGTAAACCCGAGACTATACCTGCAACAATGGTTGGGGTTCATACGATTATTGACTGTGCTACTGGGCGTCCAGAAGAGCCCATTAAAACGGTAGACT GGGAAGGAAAAGTTGCTCTTATACAATGTGCAAAAGCAATGGGAATACAGAAATATGTGTTCTATTCTATTCACAACTGTGACAAGCACCCTGAAGTTCC ACTGATGGAGATTAAGTATTGCACCGAGAAGTTTCTTCAGGACTCTGGCCTAACTCATGTCATAATACGGTTATGTGGTTTCATGCAAGGTCTTATTGGG CAATATGCAGTACCTATACTAGAAGAGAAATCTGTTTGGGGAACAGATGCCCCCACAAGAATTGCTTACATGGACACCCAGGATATAGCTCGATTGACAT TAATAGCATTACGGAATGAGAAAATTAATGGGAAGCTCCTCACATTTGCTGGACCTCGAGCTTGGACTACTGAGGAGGTCATAACATTGTGTGAGAGGCT GGCAGGGCAGGACGCAAATGTCACTACTGTTCCGGTTTCTGTCTTGAGATTCACTCGTCAATTGACTAGGTTTTTTGAGTGGACAAATGATGTTGCTGAC AGACTAGCATTTTCTGAGGTTCTTACGAGTGATATCGTTTTCTCCGTTCCAATGAATGGGACATACAATCTTCTTGGGGTGGACCAGAAAGATATAGTTA CACTGGAGAAATATCTGCAGGATTACTTCACAAACATTCTAAAGAAATTGAAAGACCTCAAAGCACAATCAAAGCAAAGCGACTTCTACATATGA
AA sequence Show only first row Show all	>Potri.009G143000.2 pacid=42771613 polypeptide=Potri.009G143000.2.p locus=Potri.009G143000 ID=Potri.009G143000.2.v4.1 annot-version=v4.1 MACKPPTQLATPGKIHRHRKFTATSTTNPFSWQATGAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLLRPRPAPADFLRDWGATVVNAD LSKPETIPATMVGVHTIIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTEKFLQDSGLTHVIIRLCGFMQGLIG QYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTLIALRNEKINGKLLTFAGPRAWTTEEVITLCERLAGQDANVTTVPVSVLRFTRQLTRFFEWTNDVAD RLAFSEVLTSDIVFSVPMNGTYNLLGVDQKDIVTLEKYLQDYFTNILKKLKDLKAQSKQSDFYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.009G143000 [exp]	0	1
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.015G106200 [exp]	1.00	0.8326
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.019G035100 [exp]	6.63	0.7578
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.008G179500 [exp]	10.19	0.8132
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	11.83	0.7652
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	14.49	0.8069
					Potri.009G051100 [exp]	19.20	0.7666
					Potri.004G011701 [exp]	20.19	0.7516
					Potri.004G011101 [exp]	22.62	0.7723
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Potri.003G083600 [exp]	23.06	0.7185
					Potri.009G035950 [exp]	23.06	0.7387

Compare expression of checked genes

Potri.009G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.