Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76270 699 / 0 O-fucosyltransferase family protein (.1) AT1G20550 697 / 0 O-fucosyltransferase family protein (.1) AT4G38390 684 / 0 RHS17 root hair specific 17 (.1) AT4G16650 540 / 0 O-fucosyltransferase family protein (.1) AT5G15740 305 / 6e-97 RRT1 O-fucosyltransferase family protein (.1) AT1G22460 306 / 1e-96 O-fucosyltransferase family protein (.1) AT3G02250 302 / 5e-96 O-fucosyltransferase family protein (.1) AT5G64600 302 / 7e-96 O-fucosyltransferase family protein (.1) AT2G03280 300 / 2e-95 O-fucosyltransferase family protein (.1.2) AT1G14020 293 / 9e-93 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183200 [exp] 994 / 0 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 691 / 0 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 688 / 0 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 559 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 554 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 313 / 5e-100 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 308 / 5e-98 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 300 / 4e-95 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 300 / 4e-95 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023948 [exp] 700 / 0 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 665 / 0 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 664 / 0 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 663 / 0 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 657 / 0 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 560 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 556 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 542 / 0 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 530 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 311 / 2e-99 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.009G143100.1 pacid=42770981 polypeptide=Potri.009G143100.1.p locus=Potri.009G143100 ID=Potri.009G143100.1.v4.1 annot-version=v4.1 ATGAAGAAAAAGAAGAGAGAAACCAAACAGCGTAACATCGCTGCCGCCGTGCTCCACTGGATTTTCTTTACGCGTCACTACTTGCTTCAGTTTCCGTTAC TCTCCGCTATCTTCGCTTTCCTTCTTTTCTTTGCCGCCTTCTCTGTCATCTCTCCTCTTCCTCCTATCATCAACCACCACCGCTCCTCAAAGTTAAAAAA TGGAGCTAAAGTAGACGAATCAACGTTTAGTACAGAGACGTCGCCTTTTCGTGCTCCGAGAAGTGGAGGGCGTCATTTATGGAACTCAAGGTTATCGAAG TTTTACTATGGCTGCAGTAACGCCAACGATAGCTTTCAAACTGCTGATTTGAAAACGAATAGTAATCGGTACTTGTTGATTGCTACAAGTGGAGGGTTAA ATCAACAGAGAACAGGGATAACAGATGGTGTTGTTGCAGCTTATATTTTGAATGCTACTCTTGTTGTTCCTAAGCTGGATCAGAAGTCTTTCTGGAATGA TAGTAGTGATTTTGCTGAAATATTTGATGTTGACTGGTTCATTTCATTCCTATCAAAAGATGTTACGATTATCAAACAGCTCCCCACAAAGGGTGGGAAA GTTTTGATCCCGTATAGAACGCGTGCTCCGAGGAAGTGTACTCCAATATGCTATCTGACTAAAGTTTTACCTGTTCTTAATAAGAAGCATGTTGTTCAGC TCGGAAAGTTTGATTACAGGCTCTCAAATAGGTTGAGCCCAGATTTACAAAAGCTAAGATGTAGAGTCAACTACCATGCTTTAAAATTCACAGACTCAAT TCTTGAAATGGGCAAAAAGCTGGTTCAGAGAATGAGAATGAAAAGTGAGCACTTTATTGCCCTGCACTTGAGGTTTGAACCTGACATGCTTGCATTCTCT GGATGCTATTTTGGCGGGGGAGAAAAAGAAAGGATGGAACTCGGCGAGATTCGGAGAAGGTGGAAATCTTTGCATGCAAGTAATCCTGACAAAGAACGGA GGCAAGGAAAATGCCCTCTCACACCAGAGGAAGTTGGTCTTACGCTGAGAGCTTTGGGTTTCGGAAGTGATGTTCACTTATATGTGGCTTCAGGTGAAGT ATATGGAGGTGAAGCAACATTAGCACCACTCAAAGCTCTCTTTCCGAATTTTCATTCAAAAGAGACTTTAGCCAGCAAGAGAGAGTTGGCACCATTTTCA TCATTTTCTTCTCGAATGGCTGCACTAGATTTCATTGTTTGTGATGAAAGTGACGTTTTTTCTACCAACAACAATGGAAACATGGCCAAAATAATAGCTG GTCGAAGGAGATACTTTGGGCACAAACCAACAGTTCGTCCAAATGCTAAAAAACTATACAAACTGTTCATAAACCGACATAACAAAACATGGGAAGAGTT TGCGTCCAGGGTTCGATCTTACCAAATTGGTTTCATGGGAGAGCCAAATGAGGTGAAGCCTGGCCGAGGTGTGTTCCATGAAAATCCTTCATCCTGCATA TGTCAGGATCCTGTAGCTAAGGCTGGGGCAGGTCTGAATCCTACTCCTCAGACTCTACCACACGAGGGACATAAAAATGTGAAAGAGAATACCGAGAGGA ATGGGACTAGTGATGTGAGTGATGAGCACTCAATAGAGGACGATCATGATCAGGATGCGACTGACGTGGATTATGTGGACAATGGAAATGCGGTCCAAGG TAAAGGCCTGGCTGGTGAAATGCTTTCGGAGGAATTCTTTTCTGACTGA
AA sequence Show only first row Show all	>Potri.009G143100.1 pacid=42770981 polypeptide=Potri.009G143100.1.p locus=Potri.009G143100 ID=Potri.009G143100.1.v4.1 annot-version=v4.1 MKKKKRETKQRNIAAAVLHWIFFTRHYLLQFPLLSAIFAFLLFFAAFSVISPLPPIINHHRSSKLKNGAKVDESTFSTETSPFRAPRSGGRHLWNSRLSK FYYGCSNANDSFQTADLKTNSNRYLLIATSGGLNQQRTGITDGVVAAYILNATLVVPKLDQKSFWNDSSDFAEIFDVDWFISFLSKDVTIIKQLPTKGGK VLIPYRTRAPRKCTPICYLTKVLPVLNKKHVVQLGKFDYRLSNRLSPDLQKLRCRVNYHALKFTDSILEMGKKLVQRMRMKSEHFIALHLRFEPDMLAFS GCYFGGGEKERMELGEIRRRWKSLHASNPDKERRQGKCPLTPEEVGLTLRALGFGSDVHLYVASGEVYGGEATLAPLKALFPNFHSKETLASKRELAPFS SFSSRMAALDFIVCDESDVFSTNNNGNMAKIIAGRRRYFGHKPTVRPNAKKLYKLFINRHNKTWEEFASRVRSYQIGFMGEPNEVKPGRGVFHENPSSCI CQDPVAKAGAGLNPTPQTLPHEGHKNVKENTERNGTSDVSDEHSIEDDHDQDATDVDYVDNGNAVQGKGLAGEMLSEEFFSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76270			O-fucosyltransferase family pr...		Potri.009G143100 [exp]	0	1
AT3G60200			unknown protein		Potri.014G043800 [exp]	1.41	0.7809
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G066100 [exp]	13.41	0.7497
AT3G54800			Pleckstrin homology (PH) and l...		Potri.008G038800 [exp]	18.70	0.7284
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	24.12	0.7561
AT4G28100			unknown protein		Potri.013G148700 [exp]	24.91	0.7016
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	32.24	0.7226	CLE12.1
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Potri.010G031000 [exp]	32.63	0.7211
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.016G002800 [exp]	32.83	0.6397
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	34.05	0.7305
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	34.85	0.7458

Compare expression of checked genes

Potri.009G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.