Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60620 679 / 0 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT1G80950 57 / 1e-08 Phospholipid/glycerol acyltransferase family protein (.1) AT2G45670 57 / 1e-08 calcineurin B subunit-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183300 [exp] 736 / 0 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.014G074300 [exp] 62 / 3e-10 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.002G151800 [exp] 58 / 5e-09 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 54 / 8e-08 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 52 / 3e-07 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.006G183700 [exp] 41 / 0.0008 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023947 [exp] 700 / 0 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10014443 [exp] 660 / 0 AT5G60620 617 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10032706 [exp] 61 / 4e-10 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10003950 [exp] 61 / 4e-10 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10015853 [exp] 56 / 2e-08 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 54 / 1e-07 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10036544 [exp] 51 / 8e-07 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 51 / 1e-06 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.009G143200.2 pacid=42770877 polypeptide=Potri.009G143200.2.p locus=Potri.009G143200 ID=Potri.009G143200.2.v4.1 annot-version=v4.1 ATGGATACTCCTGGGAACTTGAAGACATCAAGCTCCGAATTAGACCTGGATCGTCCCAACATCGAAGACTACCTTCCTTCCGGATCCTCCATTCAGGAGC CTATTGGCAAGCTTCGCTTGCGTGATTTGCTTGATATTTCACCTACTCTCACAGAAGCAGCTGGTGCCATTGTTGATGACTCATTTACACGATGTTTCAA GTCAAATCCTCCAGAACCGTGGAACTGGAATGTGTATTTGTTTCCCCTTTGGTGCTGTGGTGTGGTGATTCGATATGGGATTTTGTTCCCTGTCAGGGTT CTGGTACTGGCAATTGGGTGGATCATTTTTCTTTCATCCTACATTCCAGTGCATTTGCTGTTGAAAGGGCAAGACAAACTGAGAAAAAAGATAGAGAGGA GTTTGGTGGAGGTAATTTGTATGTTTTTTGTTGCATCATGGACTGGAGTTGTCAAGTACCATGGACCGAGACCTAGCAGGCGGCCTAAACAGGTTTTTGT GGCCAACCATACTTCCATGATTGATTTCATCATCTTAGAACAGATGACACCATTTGCTGTGATCATGCAGAAACACCCTGGTTGGGTTGGACTTTTGCAA AGCACTATATTAGAGAGTGTAGGATGTATCTGGTTCCATCGTTCAGAGGCTAAGGATCGTGAAATTGTAGCAAAGAAATTAAAGGATCACGTTCAGGGAG CTGATAATAACCCTCTTCTCATATTTCCTGAAGGAACTTGTGTAAATAACCACTACACTGTGATGTTTAAGAAGGGTGCGTTTGAACTAGACTCTACTGT TTGTCCAATTGCGATCAAGTACAATAAAATTTTTGTTGATGCCTTTTGGAACAGCCGAAAGCAGTCCTTCACAACACATCTGCTGCAGCTGATGACATCC TGGGCTGTTGTTTGTGATGTATGGTACTTGGAGCCCCAAAATCTGAGACCTGGAGAGACTCCCATTGAGTTTGCAGAGAGGGTTAGAGGCATTATATCTG CGCGAGCAGGTCTGAAAAAAGTTCCTTGGGATGGATATCTGAAATATTCTCGCCCTAGCCCAAAACATAGAGAGCGCAAGCAACAAAGTTTTGCTGAGTC AGTACTACGGAGTCTGGAGGAGAAGTGA
AA sequence Show only first row Show all	>Potri.009G143200.2 pacid=42770877 polypeptide=Potri.009G143200.2.p locus=Potri.009G143200 ID=Potri.009G143200.2.v4.1 annot-version=v4.1 MDTPGNLKTSSSELDLDRPNIEDYLPSGSSIQEPIGKLRLRDLLDISPTLTEAAGAIVDDSFTRCFKSNPPEPWNWNVYLFPLWCCGVVIRYGILFPVRV LVLAIGWIIFLSSYIPVHLLLKGQDKLRKKIERSLVEVICMFFVASWTGVVKYHGPRPSRRPKQVFVANHTSMIDFIILEQMTPFAVIMQKHPGWVGLLQ STILESVGCIWFHRSEAKDREIVAKKLKDHVQGADNNPLLIFPEGTCVNNHYTVMFKKGAFELDSTVCPIAIKYNKIFVDAFWNSRKQSFTTHLLQLMTS WAVVCDVWYLEPQNLRPGETPIEFAERVRGIISARAGLKKVPWDGYLKYSRPSPKHRERKQQSFAESVLRSLEEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Potri.009G143200 [exp]	0	1
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Potri.004G074400 [exp]	5.56	0.8839
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Potri.012G142400 [exp]	6.00	0.8772
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.007G105500 [exp]	7.74	0.8575	Pt-RAB1.7
AT5G21070			unknown protein		Potri.009G158800 [exp]	9.05	0.8830
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.001G440600 [exp]	15.90	0.8698	Pt-GSNAP.2
AT1G33490			unknown protein		Potri.013G095200 [exp]	16.00	0.8806
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.002G191400 [exp]	19.05	0.8821	ARF1.2
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028100 [exp]	22.75	0.8768	ADF6,Pt-ADF.6
AT1G06470			Nucleotide/sugar transporter f...		Potri.006G278700 [exp]	27.00	0.8740
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	29.25	0.8750	PBA1.2

Compare expression of checked genes

Potri.009G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.