Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 400 / 2e-134 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 319 / 5e-104 Flavin-binding monooxygenase family protein (.1) AT2G33230 84 / 3e-17 YUC7 YUCCA 7 (.1) AT1G04610 83 / 8e-17 YUC3 YUCCA 3 (.1) AT1G62560 82 / 1e-16 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G12160 76 / 1e-14 Flavin-binding monooxygenase family protein (.1) AT1G65860 76 / 1e-14 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G62620 75 / 4e-14 Flavin-binding monooxygenase family protein (.1) AT1G63370 73 / 1e-13 Flavin-binding monooxygenase family protein (.1) AT4G28720 72 / 2e-13 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060200 [exp] 602 / 0 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 600 / 0 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 584 / 0 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 442 / 9e-153 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 409 / 4e-138 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 394 / 4e-132 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.010G062400 [exp] 84 / 4e-17 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.008G174600 [exp] 83 / 8e-17 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.012G067500 [exp] 80 / 7e-16 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023940 [exp] 727 / 0 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10013230 [exp] 522 / 0 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 469 / 2e-164 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10014439 [exp] 459 / 8e-159 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 421 / 3e-145 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10020001 [exp] 412 / 3e-139 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 388 / 6e-130 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 384 / 2e-128 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10030750 [exp] 213 / 4e-65 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1) Lus10008454 [exp] 126 / 4e-32 AT1G19250 71 / 3e-13 flavin-dependent monooxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13738 [poplar] [flax] Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.009G143500.1 pacid=42771644 polypeptide=Potri.009G143500.1.p locus=Potri.009G143500 ID=Potri.009G143500.1.v4.1 annot-version=v4.1 ATGGAGAAACAGGTAGCAATTATTGGAGCTGGTGTTAGTGGCCTTCTTGCCTGTAAATACACAGTCTCAAAGGGTTTTAATCCAATTGTTTTTGAAGCAA GAAACAGCATTGGAGGAGCATGGATTAATACAGTAGAGACTACAAAGCTGCAGACTCCAAAACCAGCATATCAGTTCTCAGATTTTCCCTGGCCAGATTC AGTCACGGAACTCTTTCCGAACCAATATCAAGTCTTGGATTACCTGCAGTCATATGCACATCATTTTGACTTGCTTAAGCACATCAAGTTCAGTACTAAA GTACTTGGCATCAAGTATCAAGGCGCATCCGATGAAGAGATGCAGTCATGGAGCTTGTGGGGTGGAAATGGGGAGCCCTTCAGCTCAAGGGGGAAATGGA TAGTTGAAGCACAGGACACACAGAACCAGCTTTCAACTGAGGCTTACCAAGTGGACTTTGTCATCCTTTGCATTGGACGATTCAGTGATGTTCCAAACAT TCCTGAATTCCCTCCTGACAAGGGCCCGGAAGCATTCCATGGTGACGTGATACATTCTATGGACTATGCCAACATGGATTGTGAAAGTGCTACAGACTTT GTAAGAGGCAAGCGAGTTACTGTCGTGGGGTCCCAAAAATCTGCAATGGATATTGCAATGGAGTGCTCTATAGCAAATGGGGTTGAACATCCTTGCAGAG TTTTATACAGGACTGAACATTGGAACATCCCTGATTACAATCCATGGGGAGTGCCCTTACCTTATTTGTATCTTAACCGCTTCTCGGAGCTCATGGTTCA TAAGCCTGGTGAAGGATTCCTACTCAGTCTGCTGGCAACAATTCTTGCACCTCTGAGATTGGCATTTTCAAAATTCGTCGAAAGCGATATCGAGAAGAAG CTCCGTTTGGCAAAGTTTGGAATGGTTCCAAAGCATAGTTTTCTTCAAGAACTTAATTCTTGTTTGATTGCAACAGTTCCACAAGGATTCTATGATAAAG TTGAAGAGGGAAGCATCATACTGAAGAAAGCTCCCAGTTTTAGCTTCTGCAAAGAAGGCATTAAAGTTCAAGGTGAGGATACAACACTAGAGACCGACTT GGTCATATTAGCTACAGGATTTAAAGGTGAAAAGAAGCTCAAAGACATTTTTGAGTCCAAAATGTTTCAAGATTGCATACTTGGGTCCCCTGATTCAGCA GTTCCTCTCTGCAGGGAATGCATTCATCCGCGAATTCCACAGCTAGCAGTGATTGGATTCTCAGAAAGTGTTGCGAACTTGTACACTTCAGAAATGAGAT GCCGGTGGATAGCAGAGCTTCTTGATAGCACATTCAAGTTACCTAGCATAAAGGAGATGGAAAAAGATGCTGAAAAATGGGACCAATATCGGAAGCAATA TTCTGGTCGATATTACCGCAGATCATGCATCGGTGCCCTTCATATATGGTATAATGATCAACTGTGCAAAGACATGGGATGGAACCCAAAGAGAAAGAAG GGATTCTTTGCTGAATTGTTTGAGCCTTATGGACCTGCAGATTATGTCTCACCTTAA
AA sequence Show only first row Show all	>Potri.009G143500.1 pacid=42771644 polypeptide=Potri.009G143500.1.p locus=Potri.009G143500 ID=Potri.009G143500.1.v4.1 annot-version=v4.1 MEKQVAIIGAGVSGLLACKYTVSKGFNPIVFEARNSIGGAWINTVETTKLQTPKPAYQFSDFPWPDSVTELFPNQYQVLDYLQSYAHHFDLLKHIKFSTK VLGIKYQGASDEEMQSWSLWGGNGEPFSSRGKWIVEAQDTQNQLSTEAYQVDFVILCIGRFSDVPNIPEFPPDKGPEAFHGDVIHSMDYANMDCESATDF VRGKRVTVVGSQKSAMDIAMECSIANGVEHPCRVLYRTEHWNIPDYNPWGVPLPYLYLNRFSELMVHKPGEGFLLSLLATILAPLRLAFSKFVESDIEKK LRLAKFGMVPKHSFLQELNSCLIATVPQGFYDKVEEGSIILKKAPSFSFCKEGIKVQGEDTTLETDLVILATGFKGEKKLKDIFESKMFQDCILGSPDSA VPLCRECIHPRIPQLAVIGFSESVANLYTSEMRCRWIAELLDSTFKLPSIKEMEKDAEKWDQYRKQYSGRYYRRSCIGALHIWYNDQLCKDMGWNPKRKK GFFAELFEPYGPADYVSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.009G143500 [exp]	0	1
					Potri.003G175432 [exp]	1.41	0.9127
					Potri.017G130901 [exp]	5.56	0.7729
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.014G121500 [exp]	5.91	0.8313	CKI1.5
AT5G50760			SAUR-like auxin-responsive pro...		Potri.012G102700 [exp]	7.74	0.7733
					Potri.019G026101 [exp]	8.12	0.8250
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	10.19	0.8317
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Potri.010G131800 [exp]	13.41	0.7903
AT2G32070			Polynucleotidyl transferase, r...		Potri.018G036050 [exp]	15.09	0.7889
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.001G032500 [exp]	25.09	0.7362
AT1G01880			5'-3' exonuclease family prote...		Potri.002G152801 [exp]	32.49	0.7525

Compare expression of checked genes

Potri.009G143500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.