Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22470 1119 / 0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) AT2G31320 347 / 4e-105 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT4G02390 134 / 2e-32 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184100 [exp] 592 / 0 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.002G041300 [exp] 335 / 2e-100 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Potri.014G128200 [exp] 156 / 1e-39 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 100 / 1e-21 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043383 [exp] 1161 / 0 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10019539 [exp] 999 / 0 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10033871 [exp] 340 / 5e-102 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Lus10007882 [exp] 134 / 2e-32 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10030363 [exp] 103 / 1e-22 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain CL0084 [poplar] [flax] ADP-ribosyl PF00644 [poplar] [flax] PARP Poly(ADP-ribose) polymerase catalytic domain CL0084 [poplar] [flax] PF02877 [poplar] [flax] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0084 [poplar] [flax] PF05406 [poplar] [flax] WGR WGR domain CL0306 [poplar] [flax] HeH PF08063 [poplar] [flax] PADR1 PADR1 (NUC008) domain
Representative CDS sequence Show only first row Show all	>Potri.009G143900.2 pacid=42772462 polypeptide=Potri.009G143901.1.p locus=Potri.009G143900 ID=Potri.009G143900.2.v4.1 annot-version=v4.1 ATGTTAAAGAAACTCAATTGGACAAGTGTCAAGTTCTTACACCCCCTTGATCCACATGTCGTGTTTCGAGGAAGACAGAGCATGAAGAGCTACGAGGTCC ATGAAACAAGATCTCAAGCTCATGCACCATCTGATGAAAGCAGGATAATGACAAGGAAGCAGAAGGTAGGTCAAAGCAAGGCACATGAAGGAGAACAGTC ACCAAAGAAGAAGGCAAAAAATGGAAAGGATCAAAATGATAGTACAAATGGGAAATCTGAGGATAATATTGCTAAAGAGTACGAAGAGTTTTGTAAAGCA ATTGAAGAGCACCTTTCTGTTGAACAAATGAGAGAAATTTTGGATATGAATGACAAATATTCCTCCTCTGGCTCTGATGGTGTTGTCGCTACCAAATGCC AAGATTTGCTCTTTTTTGGGCCACTGGACAAGTGCCCATTATGCAGCAGCAATTTGGAATTTGATGGTAAAAGGTGTTCTTGTAAAGGGTTTTACAGTGA GTGGTCTAGTTGCACATTCAAAACAAGAACTCCACCAAGGAAAGAGGAGCCACTCAAATTACCTGATTCTGTTCTCAGCTCCTCAGCTGCAGAATTGCTA AAGAAGCATCAGGATCCCAGTCGCCGGCCTTGTCAGGGTGCCCCAATTAAACCTTTGGCAGGAATAGTGGTCTCTTTATCAGGCCGTCTTTCGCGAACAC ATCAATACTGGAAAAGGGAGATTGAGAAACATGGAGGGAAGGTTTCTAGTTCATTCAAAGGCATTACTTGCCTAGTTGTGTCACCTGCTGAGAGAGAACG TGGTGGTTCTACGAAGCTTGCCGATGCCCTGGAGGCGGGCATACCTGTAGTAAGGGAAGATTGGTTGCTTGACAGCATTGAAAAGCAAGAACCGCAGCCA ATGGAAGCATATGATGTTGTTTCTGATCTTTCTGTGGAGGGAAAAGGAATTCCATGGGACAAGCAAGATCCCAGTGAAGAGGCTCTGGAGTCTATTTCAG CCGAACTCAAACTATATGGCAAGAGAGGAGTCTACAAAGATACTAGAATGCAGGAACGTGGTGGACAGATATTTGAGAAAGATGGGATATTGTACAACTG TGCCTTCTCACTTTGTGACCTGGGCCGAGGACTGAACGAGTATTGTATCATGCAATTGATCACAGTACCAGATAGTAACTTGCATTCCTACTACAAGAAG GGGAAAGTAGGTGATAATACAAATGCGGAGGAGAGGCTTGAAGAATGGGAAAATGTGGACAATGCTATTAAGGAGTTTGTTAGGCTCTTTGTGGAACTTA CAGGAAATGAGTTTGAGCCATGGGAAAGAGAGAAGAAGTTCGAGAAAAAACGACTCTGTTTCTATCCGATTGACATGGATGATGGTATGGATGTGAGACA TGGAGGGCTTGGACTAAGGCAGCTAGGAGTTGCAGCTGCCCACAGCAGCCTTGAACCCAAAATTGCTTATCTTATGAAGATTTTGTGCAGTCAGGAGATA TACAAGTATGCTATGATGGAGATGGGTTTAGACTCTCCCGACGTGCCAATGGGGATGCTTTCAGATTTACACTTGGAAAGATGTGAGGAGGTCCTGCTTC AGTTTGTAGAAGCCGTGAAGTCAATGAAAGAGACAGGACAGAAGGCTGAGGCTGTTTGGTCAGATTATAGCCAAAGATGTTCTACTCTTCTGCATTCGAC TAGGCCTTTCGTCTTCAGAGACTATCAGGATCTCGCAGATCATGGTGCAGCTGCATTTGAGACTATCCGAGACATAAATATGGCATCACGCCTTGTAGGA GACATGTTTGGCTCAACCCTAGATGATCCGTTGTCAGATAGATACAAGAAATTGGGCTGCTCAGTTTCTGCACTAGAGAAAGATTCTGATGACTACAAGA TGATTGTGAAGTACCTGGACACAACTTATGAACCAGTCAGAGTCGGAGACATTGACTATGGTGTATCAGTTGAGAATATTTTTTCTGTGGAACCAAGTGC TTGTCCTTCTTTGGATGAAATAAAGAAGTTGCCAAACAAAGTACTGCTATGGTGTGGCACTCGAAGCTCAAACTTGTTAAGGCATTTGCAAAAAGGATTT CTGCCGTCAGTCTGTTCTCTTCCAGTCCCCGGTTACATGTTCGGGAAGGCAATTGTTTGTTCTGATGCTGCTGCGGAAGCTGCCAGGTATGGTTTTACCT CAGTAGAAAGGCCAGAAGGATTTTTAGTTCTAGCTGTTGCTTCTCTCGGGGATCAGATCATAGAAGTGAAGAGCCCACCGGAGGATACGAAGTCGTTGGA AGAGAAGAAGCGTGGGGTGAAGGGATTGGGCAAAAAGAAAACAGATGAATCTGAACATTTTATATGGAAGGATGACATCAAAGTTCCTTGTGGTCGCTTG ATTCCATCAGAGCATCGAGACAGCCCTCTTGAATACAATGAATATGCTGTTTATGATCCAAAACAGACGAGAATAAGGTTCTTGGTGGAGGTCAAGTACG AGGAGATGGGTGCTGAGCTAGATACTACAGAGCCTTGA
AA sequence Show only first row Show all	>Potri.009G143900.2 pacid=42772462 polypeptide=Potri.009G143901.1.p locus=Potri.009G143900 ID=Potri.009G143900.2.v4.1 annot-version=v4.1 MLKKLNWTSVKFLHPLDPHVVFRGRQSMKSYEVHETRSQAHAPSDESRIMTRKQKVGQSKAHEGEQSPKKKAKNGKDQNDSTNGKSEDNIAKEYEEFCKA IEEHLSVEQMREILDMNDKYSSSGSDGVVATKCQDLLFFGPLDKCPLCSSNLEFDGKRCSCKGFYSEWSSCTFKTRTPPRKEEPLKLPDSVLSSSAAELL KKHQDPSRRPCQGAPIKPLAGIVVSLSGRLSRTHQYWKREIEKHGGKVSSSFKGITCLVVSPAERERGGSTKLADALEAGIPVVREDWLLDSIEKQEPQP MEAYDVVSDLSVEGKGIPWDKQDPSEEALESISAELKLYGKRGVYKDTRMQERGGQIFEKDGILYNCAFSLCDLGRGLNEYCIMQLITVPDSNLHSYYKK GKVGDNTNAEERLEEWENVDNAIKEFVRLFVELTGNEFEPWEREKKFEKKRLCFYPIDMDDGMDVRHGGLGLRQLGVAAAHSSLEPKIAYLMKILCSQEI YKYAMMEMGLDSPDVPMGMLSDLHLERCEEVLLQFVEAVKSMKETGQKAEAVWSDYSQRCSTLLHSTRPFVFRDYQDLADHGAAAFETIRDINMASRLVG DMFGSTLDDPLSDRYKKLGCSVSALEKDSDDYKMIVKYLDTTYEPVRVGDIDYGVSVENIFSVEPSACPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGF LPSVCSLPVPGYMFGKAIVCSDAAAEAARYGFTSVERPEGFLVLAVASLGDQIIEVKSPPEDTKSLEEKKRGVKGLGKKKTDESEHFIWKDDIKVPCGRL IPSEHRDSPLEYNEYAVYDPKQTRIRFLVEVKYEEMGAELDTTEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Potri.009G143900 [exp]	0	1
AT3G11680			Aluminium activated malate tra...		Potri.016G070000 [exp]	4.24	0.9561
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085300 [exp]	4.58	0.9763
AT4G08570			Heavy metal transport/detoxifi...		Potri.002G092200 [exp]	4.89	0.9696
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107900 [exp]	7.07	0.9678
AT4G03540			Uncharacterised protein family...		Potri.004G043300 [exp]	9.38	0.9620
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G083200 [exp]	11.40	0.9510	PtrEXLB1,EXLB1.1
AT5G02070			Protein kinase family protein ...		Potri.013G011700 [exp]	11.74	0.9638
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.003G202200 [exp]	13.22	0.9625
					Potri.010G115900 [exp]	13.41	0.9483
AT1G23070			Protein of unknown function (D...		Potri.018G062600 [exp]	16.24	0.8696

Compare expression of checked genes

Potri.009G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.