Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27600 776 / 0 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT1G80350 279 / 7e-89 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 266 / 2e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G45500 261 / 4e-82 AAA-type ATPase family protein (.1.2) AT3G27120 237 / 3e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 213 / 6e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 211 / 6e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 202 / 1e-57 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 199 / 2e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 199 / 2e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184500 [exp] 820 / 0 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 707 / 0 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 698 / 0 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 696 / 0 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G176900 [exp] 273 / 4e-86 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G065100 [exp] 266 / 2e-85 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G057800 [exp] 269 / 5e-85 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 266 / 5e-85 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G071900 [exp] 250 / 6e-78 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004891 [exp] 791 / 0 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 788 / 0 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 768 / 0 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 759 / 0 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10011477 [exp] 281 / 1e-89 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 281 / 2e-89 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 261 / 7e-83 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023310 [exp] 250 / 1e-76 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038001 [exp] 245 / 2e-76 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 243 / 2e-75 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04212 [poplar] [flax] MIT MIT (microtubule interacting and transport) domain CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain CL0671 [poplar] [flax] AAA_lid PF09336 [poplar] [flax] Vps4_C Vps4 C terminal oligomerisation domain
Representative CDS sequence Show only first row Show all	>Potri.009G144300.1 pacid=42772333 polypeptide=Potri.009G144300.1.p locus=Potri.009G144300 ID=Potri.009G144300.1.v4.1 annot-version=v4.1 ATGTACAGCAATTTCAAAGAACAAGCAATAGAGTACGTGAAACAAGCGGTACAAGAAGACAATGCAGGGAATTACTCGAAGGCGTTTCCTTTATACATGA ACGCACTTGAATACTTCAAGACCCACTTGAAATACGAGAAGAACCCTAAAATTCGTGAAGCGATTACTCAAAAATTCACCGAGTATCTTCGTCGGGCGGA GGAGATCAGGACTGTTCTTGATGAAGGAGGTCCTGGCCCTAATTCTAATGGGGATGCTGCTGTTGCGACGAGGGCAAAGACTAAGCCTAAAGATGGCGAG GATGGGGATGATCCGGAGAAAGATAAGTTGAGAGCTGGATTGAATTCGGCGATTGTGAGGGAAAAGCCTAATGTGAAGTGGAATGATGTGGCTGGGCTTG AGAGTGCTAAACAGGCTTTGCAAGAAGCTGTTATTTTGCCTGTGAAGTTCCCTCAGTTTTTTACAGGTAAGAGACGACCTTGGAGGGCTTTTCTTTTGTA TGGGCCACCTGGAACTGGAAAGTCATACTTGGCCAAGGCTGTTGCAACTGAAGCAGAGTCCACTTTTTTCAGTGTTTCTTCATCAGATCTGGTTTCAAAG TGGATGGGTGAGAGTGAAAAGCTTGTTTCAAACCTTTTCCAAATGGCCCGTGAAAGTGCTCCTTCAATCATTTTCGTTGATGAAATAGATTCCTTGTGTG GTCAACGTGGAGAGGGCAATGAGAGTGAAGCTTCGAGACGTATCAAGACTGAACTTCTCGTGCAGATGCAGGGGGTAGGAACCACTGACCAGAAGGTTCT TGTTCTTGCAGCAACAAATACTCCATATGCTCTAGATCAGGCCATCCGACGACGTTTTGACAAGCGCATATATATCCCGCTGCCTGATTTGAAGGCTCGT CAACATATGTTCAAGGTGCATCTAGGAGATACTCCTCACAACTTGACTGAAAGTGATTTTGAAAGCTTGGCACGAAGGACAGAGGGCTTTTCAGGTTCAG ATATTTCTGTTTGTGTCAAAGATGTCCTCTTTGAACCAGTTCGTAAAACCCAAGATGCTATGTTTTTCATACATACTTCTGATGATATGTGGGTGCCTTG TGGACCGAAGCAACCTGGTGCTGTCCAAATTTCCATGCAGGACCTTGCAGCACAAGGGCTTGCAGAAAAGATCCTTCCACCCCCTATCATGAAAACAGAT TTTGACAAGGTCCTAGCAAGACAAAAGCCAACAGTGAGCAAAGCTGATCTAGATGTCCATGAGAGATTCACAAAGGAGTTTGGGGAGGAAGGTTAA
AA sequence Show only first row Show all	>Potri.009G144300.1 pacid=42772333 polypeptide=Potri.009G144300.1.p locus=Potri.009G144300 ID=Potri.009G144300.1.v4.1 annot-version=v4.1 MYSNFKEQAIEYVKQAVQEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRTVLDEGGPGPNSNGDAAVATRAKTKPKDGE DGDDPEKDKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSK WMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGTTDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKAR QHMFKVHLGDTPHNLTESDFESLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFIHTSDDMWVPCGPKQPGAVQISMQDLAAQGLAEKILPPPIMKTD FDKVLARQKPTVSKADLDVHERFTKEFGEEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.009G144300 [exp]	0	1
AT5G25070			unknown protein		Potri.002G000800 [exp]	2.64	0.8615
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.008G209900 [exp]	2.82	0.7743
AT5G20610			unknown protein		Potri.006G145500 [exp]	8.94	0.8221
AT1G55590			RNI-like superfamily protein (...		Potri.011G169800 [exp]	10.58	0.7750
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	15.23	0.7984
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	16.43	0.7857	Pt-CDPK5.3
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	17.66	0.8130
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	29.49	0.7883
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.008G048400 [exp]	33.49	0.7422
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	36.24	0.7705

Compare expression of checked genes

Potri.009G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.