Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59810 507 / 1e-169 ATSBT5.4 Subtilase family protein (.1) AT2G04160 502 / 1e-167 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G45650 477 / 1e-157 subtilase family protein (.1) AT5G67360 468 / 1e-154 ARA12 Subtilase family protein (.1) AT1G20160 459 / 5e-151 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT4G10520 457 / 3e-150 Subtilase family protein (.1) AT5G51750 448 / 2e-146 ATSBT1.3 subtilase 1.3 (.1) AT4G10550 447 / 3e-146 Subtilase family protein (.1.2.3) AT4G26330 444 / 1e-145 ATSBT3.18, UNE17 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) AT3G14240 443 / 9e-145 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184600 [exp] 804 / 0 AT5G67360 399 / 5e-130 Subtilase family protein (.1) Potri.011G146300 [exp] 540 / 0 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.001G455800 [exp] 538 / 0 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.004G161400 [exp] 523 / 1e-175 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.001G468800 [exp] 520 / 2e-174 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.011G165900 [exp] 518 / 1e-173 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 517 / 2e-173 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 514 / 2e-172 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 513 / 4e-172 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002780 [exp] 506 / 8e-169 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10039086 [exp] 501 / 3e-167 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10007083 [exp] 502 / 4e-167 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10020458 [exp] 499 / 3e-166 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10039085 [exp] 494 / 2e-164 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 487 / 9e-162 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 487 / 2e-161 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 486 / 3e-161 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10016064 [exp] 478 / 2e-157 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 474 / 1e-156 AT5G59810 815 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.009G144500.3 pacid=42771215 polypeptide=Potri.009G144500.3.p locus=Potri.009G144500 ID=Potri.009G144500.3.v4.1 annot-version=v4.1 ATGAGAGTTGACAATTTTCTTGCTTTTCTCTTATTCATCACAGTTGCACAAGTTCATGGAGCCACAGCCACTGAGAAGACAAAGCATTATATAGTTTACA TGGGAGAGCATTCACACCCTAATGAAGAATCCGTGATCAATGATAACCATGAGATACTTGCTTCAGTTACTGGAAGTTTCGATGAAGCGAAGGAAGTAGC TCTTCACCATTATACGAAAAGCTTTAGAGGTTTTTCAGCCATTCTAACACAAGAGCAAGCTCAGCAGCTTGCAGAAAGTGATTCGGTTGTTTCTGTGTTC GAGAGCCGAACGAATCAGCTCCACACAACGCATTCATGGGATTTTTTAGGCGTAAACTCTCCCTATGCGAATAACCAAAGGCCAGTGACTTCGTCAGTGT CTGATGTTATTGTTGGTGTCATTGATACAGGATTTTGGCCCGAGTCTGAGAGCTTCAGCGATACAGGCTTAGGCACTGTGCCTGTGAAATTCAAGGGAGA ATGTGTTGCTGGTGAAAATTTTACATCAGCTAACTGCAACAGAAAAGTTGTAGGAGCACGGTTCTACTTCAAAGGATTTGAAGCAGAAAATGGGCCCTTA GAAGATTTCGGTGGCACTTTCTTCCGATCAGCACGAGACAGTGATGGCCATGGATCCCACACTGCCTCAACTATAGCTGGAGCTGTGGTGTCTAATGTTA GCTTATTTGGGATGGCCAGAGGTACTGCAAGAGGTGGTGCACCATATGCCAGACTTGCCATCTACAAGGCTTGCTGGTTTAACCTGTGCAATGATGCTGA TATTCTTTCTGCCATGGACGATGCAATCAATGATGGAGTTGATATCCTTTCTCTTTCCTTTGGTGCTAACCCTCCTGAGCCTATTTACTTTGAGAGTGCA ACTTCTGTTGGAGCTTTCCATGCATTCAGGAAAGGAATAGTTGTGTCTTCTTCAGCAGGGAACTCATTTTCCCCAAAGACTGCAGCCAATGTTGCTCCTT GGATCCTCACTGTTGCTGCTAGCTCTTTGGACAGGGAATTTGACTCAAACATTTATCTTGGAAATTCACAAATTTTGAAGGGTTTTTCACTAAATCCTCT GAAAATGGAAACCTCATACGGTTTGATAGCTGGAAGTGATGCAGCTGTACCAGGTGTTACAGCAAAGAATGCGAGCTTTTGCAAGGACAATACTCTAGAC CCTGCAAAGACTAAAGGGAAGATTGTGGTGTGCATAACTGAGGTTCTTATTGATGATCCAAGAAAAAAGGCTGTAGCTGTACAACTAGGTGGAGGTGTAG GAATTATATTGATTGATCCAATTGTCAAAGAAATTGGCTTTCAGTCTGTAATACCAAGCACATTAATCGGTCAAGAAGAAGCACAACAACTTCAGGCTTA TATGCAAGCACAAAAGAATCCAACTGCAAGAATTGCGCCAACAGTTACTGTTTTGAACACAAAACCTGCACCCGAAGTGACAGTGTTTTCTTCACAAGGA CCAAATATTATAACCCCGGATATCATCAAGCCAGATATTACAGCTCCTGGTCTGAATATTTTGGCAGCATGGTCTCCAGTGTCAACTGATGACGCAGCTG GGCGATCCGTGAACTACAACATAATCTCTGGAACCTCCATGTCTTGCCCACATGTTTCAGCAGTTGCAGCAATCTTGAAATCTTACAGACCTTCTTGGAG TCCAGCAGCGATAAAGTCAGCAATAATGACAACAGCTATAGTCATGGATAACACTCGAAAACTTATTGGGAGAGATCCAGATGACACCCAGGCCACACCT TTTGACTATGGATCCGGACACATAAATCCACTAGCAGCATTGAATCCAGGACTAGTTTATGACTTTGATTCCAATGACGTTATTAATTTTCTCTGCAGCA CTGGTGCAAGGCCTGCACAATTGAAAAATCTCACAGGACAGCCAACTTATTGCCCAAAGCAAACTAAACCATCATACGATTTCAACTACCCCTCGATTGG CGTGTCTAACATGAATGGAAGCATATCAGTGTACAGAACAGTTACTTATTATGGTACAGGACAAACTGTTTATGTTGCGAAGGTTGATTATCCACCTGGT GTTCAAGTTACAGTGACACCTGCTACTCTCAAGTTCACAAAGACAGGCGAAAAACTGTCTTTCAAGATAGATTTTAAACCTCTGAAGACTAGTGATGGGA ATTTTGTGTTTGGAGCTCTGACATGGAGTAGTGGTATTCACAAGGTCAGGAGTCCTATTGCTCTGAATGTGCTTTCGTTGTAG
AA sequence Show only first row Show all	>Potri.009G144500.3 pacid=42771215 polypeptide=Potri.009G144500.3.p locus=Potri.009G144500 ID=Potri.009G144500.3.v4.1 annot-version=v4.1 MRVDNFLAFLLFITVAQVHGATATEKTKHYIVYMGEHSHPNEESVINDNHEILASVTGSFDEAKEVALHHYTKSFRGFSAILTQEQAQQLAESDSVVSVF ESRTNQLHTTHSWDFLGVNSPYANNQRPVTSSVSDVIVGVIDTGFWPESESFSDTGLGTVPVKFKGECVAGENFTSANCNRKVVGARFYFKGFEAENGPL EDFGGTFFRSARDSDGHGSHTASTIAGAVVSNVSLFGMARGTARGGAPYARLAIYKACWFNLCNDADILSAMDDAINDGVDILSLSFGANPPEPIYFESA TSVGAFHAFRKGIVVSSSAGNSFSPKTAANVAPWILTVAASSLDREFDSNIYLGNSQILKGFSLNPLKMETSYGLIAGSDAAVPGVTAKNASFCKDNTLD PAKTKGKIVVCITEVLIDDPRKKAVAVQLGGGVGIILIDPIVKEIGFQSVIPSTLIGQEEAQQLQAYMQAQKNPTARIAPTVTVLNTKPAPEVTVFSSQG PNIITPDIIKPDITAPGLNILAAWSPVSTDDAAGRSVNYNIISGTSMSCPHVSAVAAILKSYRPSWSPAAIKSAIMTTAIVMDNTRKLIGRDPDDTQATP FDYGSGHINPLAALNPGLVYDFDSNDVINFLCSTGARPAQLKNLTGQPTYCPKQTKPSYDFNYPSIGVSNMNGSISVYRTVTYYGTGQTVYVAKVDYPPG VQVTVTPATLKFTKTGEKLSFKIDFKPLKTSDGNFVFGALTWSSGIHKVRSPIALNVLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.009G144500 [exp]	0	1
AT3G01930			Major facilitator superfamily ...		Potri.017G064201 [exp]	12.64	0.7779
AT5G27550			P-loop containing nucleoside t...		Potri.005G030484 [exp]	26.83	0.7561
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	32.68	0.7549
AT5G45230			Disease resistance protein (TI...		Potri.019G098550 [exp]	57.57	0.7266
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.014G075901 [exp]	77.35	0.6914
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.010G026200 [exp]	106.95	0.7073	SPL7.1
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.008G194400 [exp]	183.91	0.6467
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.004G174150 [exp]	205.93	0.6558

Compare expression of checked genes

Potri.009G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.