Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44530 1398 / 0 HIRA homolog of histone chaperone HIRA (.1.2) AT5G64630 160 / 2e-41 MUB3.9, NFB1, NFB01, MUB3, FAS2 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT5G25150 88 / 2e-17 TAF5 TBP-associated factor 5 (.1) AT3G49660 83 / 1e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 77 / 5e-14 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G02730 73 / 2e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 74 / 6e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 72 / 2e-12 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G47410 71 / 4e-12 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT2G26060 67 / 2e-11 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184900 [exp] 1910 / 0 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.007G108200 [exp] 144 / 1e-36 AT5G64630 667 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.018G020200 [exp] 87 / 3e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 87 / 3e-17 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.005G144400 [exp] 81 / 3e-15 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.007G050100 [exp] 80 / 5e-15 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.013G079600 [exp] 78 / 3e-14 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.T125206 [exp] 76 / 1e-13 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 75 / 2e-13 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004893 [exp] 1531 / 0 AT3G44530 1389 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10020585 [exp] 1520 / 0 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10033489 [exp] 147 / 2e-37 AT5G64630 612 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10020888 [exp] 136 / 1e-32 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10024447 [exp] 95 / 1e-19 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 93 / 5e-19 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 82 / 2e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 81 / 4e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 77 / 4e-14 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10026837 [exp] 74 / 5e-13 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF07569 [poplar] [flax] Hira TUP1-like enhancer of split
Representative CDS sequence Show only first row Show all	>Potri.009G144800.1 pacid=42772619 polypeptide=Potri.009G144800.1.p locus=Potri.009G144800 ID=Potri.009G144800.1.v4.1 annot-version=v4.1 ATGATTGCGGAGAAACCCAGTTGGGTCAGGCATGAGGGAATGCAAATTTTCTCCATTGATATTCAACCTGGTGGCCACAGGTTTGCTACCGGCGGAGGTG ATCACAAGGTTCGGATATGGAACATGAACTCTGTTAGCAGGAACTTGGAAATTAACGAACCAACACAAAGGCTTCTTGCAACTCTCCGCGACCACTTCGG GTCAGTCAATTGTGTTAGATGGGCTAAGCATGGTCGGTATGTTGCATCTGGGTCTGATGATCAAGTAATTTTAGTGCATGAAAGGAAGCCTGGTTCAGGA ACTACAGAGTTTGGCAGCGGAGAGCCTCCTGATGTTGAAAATTGGAAAGTTGCAATGACATTGAGAGGGCACACTGCAGATGTGGTGGATCTTAATTGGT CTCCAGATGACTCCATATTGGCTAGCGGGAGTTTGGACAACACTATCCATATCTGGAATATGAGCAATGGCATTTGCACTGCTGTTCTTAGAGGTCACTC GAGCCTGGTTAAAGGAGTTACTTGGGATCCAATTGGCTCTTTCATAGCAAGTCAATCTGATGATAAGACAGTTATTATATGGCGAACAAGTGACTGGAGT CTGGCTCACAGAACAGATGGCCACTGGGCTAAATCACTTGGATCTACATTTTTCAGGCGCTTAGGATGGTCCCCCTGTGGTCATTTTATAACTACAACTC ATGGTTTTCAGAAGCCAAGGCATTCTGCACCTGTTCTCGAGAGAGGGGAATGGGCTGCCACATTTGATTTCTTAGGACACAATGCCCCCATTATTGTGGT GAAGTTTAACCATTCAATGTTTAGAAGAAATTTTACCAATGCTCAGGAATTGAAAGCTGCACAAGTTGGGTGGACTAATGGGGCCTCAAAGATTGGAGGG AAAGAATCACAGCCATACAATGTTATTGCAATTGGGAGTCAAGATCGCACTATAACTGTATGGACGACTGCAAGTCCTCGTCCTCTTTTTGTGGCCAAGC ACTTCTTTACTCAAAGTGTTGTAGATTTATCCTGGAGTCCTGATGGGTATTCTCTTTTTGCATGTTCCTTGGATGGTACTGTGGCTACTTTCCATTTTGA TGCTAAAGAACTTGGACACAGGCTAAGTGATACTGAACTTGATGAGTTAAAAAGAAGTCGTTATGGTGATGTCAGAGGTAGACAGGCAAACCTAGCTGAG AGTGCTGCACAGTTATTGCTTGAAGCATCAACCAAAGAAACAACAAATAAAAAAGCGGCATTGGATATTCAGCAAAGTCAAATACCTGTAAAATCTTCTG TTGACTTGGGGGTCACTGCAAAGACTTCTGAGGCACAAGTTGATGATGGCAAGAAGAGTGTGGGAGCTGCTGGTGATGGATTAAATAAATTGCCTGCTTC TGCTCGGATTTCTAGTCCAGTAAAACAAAGAGAATACAGACGCGCTGATGGTAGAAAGAGAATCATTCCAGAAGCTTTAGGAGTGCCCAATCAACCGGAA ACAATGACCGGCGGGGCTCAGTCTCAAGCTCTTGATTTCCCTCTTGCGGCATCTGATCACAGAAAGGTTGAAAATGGAATAGTTCCTGTTGATGGTGGCT TGCGAGAGAGTTCTATCAGGGGAACACTTGGCAGAAACTCTGATATAAAAGAGCGCTCTGGTGTCAATGCAAGGGCTACTGTTACTGAGAGCCTGGTCAT TGAGAAGGTTCCAGGATCTGCAGGAGGAGATGGAAGCATTAATGTGCAACAGTCTGGGATAAAGGCATCTAGTTCCTCTGGTTCTTGTAGCACCCCTCTC TCAATTAGGGTATTTGATAAGAAATTAGGGGAAGATGCCACACCAATTTGCTTGGAAGCTCGTTCTAGAGAACATGCAGTGAATGATGTTGTTGGGGTGG GGAGTACAAGTATGATGAAAGAAACAGAAATTGTTTGCACAAGAGGAGCTGAAACTCTTTGGTCTGATAGGATCTCAGGAAAAGTTACTGTTTTAGCTGG AAATACAAACTTCTGGGCAGTTGGGTGTGAAGATGGATGCCTACAGGTTTACACGAAGTGCGGGAGACGTGCCATGCCCACTATGATGATGGGATCTGCA GCAACTTTTGTTGATTGTGATGAGTGCTGGAAGTTGTTGCTGGTCACAAGGAAGGGCTCCTTGTATGTATGGGATCTGTTTAGTCGGAATTGTCTCCTTC AGGATTCTTTGGCATCTCTAATTACCTCAGACCCAAACTCTGCAAAAGGTACAATCAAAGTTATATCTGTGAAGTTATCAAAATCCGGTTCTCCTCTTGT TGTCCTGGCCACACGTCATGCCTTCCTCTTTGACATGAGTCTTATGTGTTGGCTGAGAGTGGCAGATGACTGCTTCCCTGCATCGAATTTTGCTAGCTCT TGGAATTTGAGTTCGATTCAGAGTGGTGAGCTAGCTGCATTGCAGGTGGATGTGAGGAAATATTTGGCCAGAAAACCAAGTTGGAGCAGAGTGACAGATG ATGGGGTGCAGACACGAGCTCATTTGGAGGCTCAGTTGGAATCCTCCTTAGCTTTAAAGTCCCCTAATGAATATCGCCAGTGCCTTCTATCTTACATACG CTTCCTTGCAAGAGAAGCAGATGAGTCTCGTTTACGAGAAGTATGCGAGAGCTTTCTTGGACCTCCTACTGGGATGGCTGAATCTACATCTTCAGATACA AAAATGGTGTCTTGGGATCCTTGTGTGCTTGGAATGAGAAAGCACAAACTCTTAAGAGAAGATATTCTTCCTGCAATGGCATCAAACAGAAAAGTCCAAC GTTTACTAAATGAGTTCATGGATCTCTTGTCTGAATATGGAAGTGTAGAAACTAACCAAAAAACCCCCGTGCTACCTACTACATCTCAACAAGCAACCAG TCAAAAGAATTGTGATCCACCAGTAACAGAGCAAATGGACACTGCCCCACAAGCAATAGATCATACAAACGCTGCCCAACCAGCGAAAGATCATGAGGAC CCAACCCCCATTATAACTGATGAAGCAGACCATATTCCACTGGCTATTGATGAAGTGGATTTGTGCCCGATGGTAACAGATCAAGTTATTCAGGATTCAC TTGACAGAGAAGCTGGTTCTTGA
AA sequence Show only first row Show all	>Potri.009G144800.1 pacid=42772619 polypeptide=Potri.009G144800.1.p locus=Potri.009G144800 ID=Potri.009G144800.1.v4.1 annot-version=v4.1 MIAEKPSWVRHEGMQIFSIDIQPGGHRFATGGGDHKVRIWNMNSVSRNLEINEPTQRLLATLRDHFGSVNCVRWAKHGRYVASGSDDQVILVHERKPGSG TTEFGSGEPPDVENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSNGICTAVLRGHSSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWS LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNFTNAQELKAAQVGWTNGASKIGG KESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVATFHFDAKELGHRLSDTELDELKRSRYGDVRGRQANLAE SAAQLLLEASTKETTNKKAALDIQQSQIPVKSSVDLGVTAKTSEAQVDDGKKSVGAAGDGLNKLPASARISSPVKQREYRRADGRKRIIPEALGVPNQPE TMTGGAQSQALDFPLAASDHRKVENGIVPVDGGLRESSIRGTLGRNSDIKERSGVNARATVTESLVIEKVPGSAGGDGSINVQQSGIKASSSSGSCSTPL SIRVFDKKLGEDATPICLEARSREHAVNDVVGVGSTSMMKETEIVCTRGAETLWSDRISGKVTVLAGNTNFWAVGCEDGCLQVYTKCGRRAMPTMMMGSA ATFVDCDECWKLLLVTRKGSLYVWDLFSRNCLLQDSLASLITSDPNSAKGTIKVISVKLSKSGSPLVVLATRHAFLFDMSLMCWLRVADDCFPASNFASS WNLSSIQSGELAALQVDVRKYLARKPSWSRVTDDGVQTRAHLEAQLESSLALKSPNEYRQCLLSYIRFLAREADESRLREVCESFLGPPTGMAESTSSDT KMVSWDPCVLGMRKHKLLREDILPAMASNRKVQRLLNEFMDLLSEYGSVETNQKTPVLPTTSQQATSQKNCDPPVTEQMDTAPQAIDHTNAAQPAKDHED PTPIITDEADHIPLAIDEVDLCPMVTDQVIQDSLDREAGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	0	1
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	1.00	0.9097
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	3.87	0.8912
AT3G22380		TIC	time for coffee (.1.2)		Potri.002G052300 [exp]	4.00	0.8769
AT4G32360			Pyridine nucleotide-disulphide...		Potri.017G118801 [exp]	4.47	0.8726
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	4.89	0.9008	TTN8.2
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	5.38	0.8416
AT1G31810		AFH14	Formin Homology 14 (.1)		Potri.003G103800 [exp]	5.47	0.8602
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	5.47	0.8969
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	6.00	0.8819
AT4G31880			unknown protein		Potri.006G263300 [exp]	7.21	0.8917

Compare expression of checked genes

Potri.009G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.