Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33790 578 / 0 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22500 565 / 0 FAR1 fatty acid reductase 1 (.1) AT3G44540 561 / 0 FAR4 fatty acid reductase 4 (.1.2) AT3G44550 523 / 0 FAR5 fatty acid reductase 5 (.1) AT3G44560 503 / 1e-175 FAR8 fatty acid reductase 8 (.1) AT5G22420 338 / 2e-112 FAR7 fatty acid reductase 7 (.1) AT3G11980 340 / 1e-110 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT3G56700 291 / 2e-92 AtFAR6, FAR6 fatty acid reductase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G185100 [exp] 862 / 0 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 645 / 0 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.004G185000 [exp] 610 / 0 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G144900 [exp] 606 / 0 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G062200 [exp] 363 / 9e-120 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 327 / 1e-105 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 318 / 3e-103 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145100 [exp] 129 / 4e-36 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020584 [exp] 567 / 0 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10006264 [exp] 549 / 0 AT4G33790 624 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036824 [exp] 474 / 5e-164 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10019187 [exp] 466 / 6e-161 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10029336 [exp] 345 / 6e-112 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10016208 [exp] 344 / 1e-111 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015974 [exp] 338 / 6e-110 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10000851 [exp] 280 / 1e-87 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 152 / 2e-43 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2) Lus10036822 [exp] 77 / 1e-14 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03015 [poplar] [flax] Sterile Male sterility protein CL0063 [poplar] [flax] NADP_Rossmann PF07993 [poplar] [flax] NAD_binding_4 Male sterility protein
Representative CDS sequence Show only first row Show all	>Potri.009G145000.1 pacid=42771809 polypeptide=Potri.009G145000.1.p locus=Potri.009G145000 ID=Potri.009G145000.1.v4.1 annot-version=v4.1 ATGGAATTGGGAAGTATACTGCAGTTTCTTGAGAACAAGACCATTTTGGTCACAGGAGCCACTGGTTATCTAGCAAAGATTTTTGTGGAGAAAATATTGA GGGTCCAGCCAAATGTGAAGAGATTTTATCTCCTTCTAAGAGCTGCAGATGCCAAGTCTGCTACCGAACGTCTCCGTGATGAGGTCATTGGGAAGGACTT GTTTAGGGTTTTAAGGGAGAAACATGGTGCAAGTCTGCATTCCTTTATATCAGAAAAGGTAACTCCTGTCCCTGGTGACATCTCCTACGAAGACTTGGGA GTGAAAGACTCTTCTTTGAAGGATGAAATGTGGAGAGAAATTGATGTTGTCCTTAATTTTGCTGCCACCACCAACTTTGATGAAAGATACGATGTTGCAC TAGGCATCAATACACTGGGAGCCTTGCATGTTTTAAACTTTGCAAAGAAATGTGTTAAAATAAAGACGCTTGTCCATGTATCCACCGCTTATGTGTGCGG CGAAGATGCTGGGCTTATACTCGAGCAACCATATCATATGGGTATGGCCAAAAGGGGGGACGAGAAAATTGATATCAACTTTGAAAAGAAAATGGTGCAA GAAAAAATAAATGAACTCAAATTACAAGATGTTCCCGAGAAAGAAATTACTTCAGCTATGAAGGATTTCGGCATTGAGCGGGCAAGGCTTTTCGGATGGC CAAACACTTACGTATTTACCAAGGCAATGGGAGAAATGCTGTTAGTGAATTTCAAAGATAGTTTGCCATTACTAATTATACGCCCCACCATGGTAGCAAG TACTTACAAAGAACCATTTCCTGGTTGGATTGAAGGTGTCAGAACTATTGACAGCGTAATTGTGGGCTACGGTAAAGGCAGAGTTACATGCTTTATTTCC GGACCACGATCAACTCTTGACGTGATACCAGCTGACATGGTTGTCAATGCCATTATAGTTGCCATGGTAGCACGCGCCAAGCAGCATTCGGAGATCATTT ATCATTTGGGTTCTTCGTTCAGAAATCCTGTAAATATCTCAAATCTTCATGATTTTATTTTTCGCTATTTCAGCGAACATCCGTGGATTAATAAGGAGGG GGAGTCGGTAAAAATTGGCAAAGGAATTGTTTTGAGCAGCATGTCCAAGTTCTACACGTACATGGCCATTCGTTTTCTCCTGCCGTTGAAGGCATTGCAA TTGTTCAACATATTGTTGTTTAAAAAATATCAAGACGTGTACACCGTTCTTGATAGAAGAGTAAAATTGGTGATGCGGTTGGCAGACCTTTATAAACCTT ATGTGTTCTTCGAGGGCATATTTGATGATCTAAATTCTGAAAAGTTGCGGATAATATCCAAGGAGACCTGTCAGGAAACAGATATCTTCGACTTTGATCC TATGAACATTGATTGGGAAGATTACATGATAAATGTTCACATTCCTGGTCTAGTTAAATATGTGATGTAA
AA sequence Show only first row Show all	>Potri.009G145000.1 pacid=42771809 polypeptide=Potri.009G145000.1.p locus=Potri.009G145000 ID=Potri.009G145000.1.v4.1 annot-version=v4.1 MELGSILQFLENKTILVTGATGYLAKIFVEKILRVQPNVKRFYLLLRAADAKSATERLRDEVIGKDLFRVLREKHGASLHSFISEKVTPVPGDISYEDLG VKDSSLKDEMWREIDVVLNFAATTNFDERYDVALGINTLGALHVLNFAKKCVKIKTLVHVSTAYVCGEDAGLILEQPYHMGMAKRGDEKIDINFEKKMVQ EKINELKLQDVPEKEITSAMKDFGIERARLFGWPNTYVFTKAMGEMLLVNFKDSLPLLIIRPTMVASTYKEPFPGWIEGVRTIDSVIVGYGKGRVTCFIS GPRSTLDVIPADMVVNAIIVAMVARAKQHSEIIYHLGSSFRNPVNISNLHDFIFRYFSEHPWINKEGESVKIGKGIVLSSMSKFYTYMAIRFLLPLKALQ LFNILLFKKYQDVYTVLDRRVKLVMRLADLYKPYVFFEGIFDDLNSEKLRIISKETCQETDIFDFDPMNIDWEDYMINVHIPGLVKYVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Potri.009G145000 [exp]	0	1
					Potri.005G189000 [exp]	8.00	0.8341
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143133 [exp]	11.22	0.8147
AT1G80580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.017G053700 [exp]	12.00	0.7004
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G064100 [exp]	15.87	0.8118
AT3G60270			Cupredoxin superfamily protein...		Potri.014G049600 [exp]	16.85	0.7027
AT1G08440			Aluminium activated malate tra...		Potri.001G217300 [exp]	19.36	0.8062
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.009G042500 [exp]	25.09	0.6816
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063001 [exp]	25.37	0.8034
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.007G108701 [exp]	25.90	0.7117
AT5G39130			RmlC-like cupins superfamily p...		Potri.013G063200 [exp]	26.83	0.8025

Compare expression of checked genes

Potri.009G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.