Plant FIBer expression Database

Potri.009G145200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G16650 568 / 0 PRORP2 proteinaceous RNase P 2 (.1)
AT4G21900 558 / 0 PRORP3 proteinaceous RNase P 3 (.1)
AT2G32230 401 / 1e-133 PRORP1 proteinaceous RNase P 1 (.1)
AT5G60430 116 / 2e-30 drug transmembrane transporters;antiporters (.1.2)
AT1G77360 49 / 8e-06 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G63400 45 / 0.0001 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT2G02890 44 / 0.0002 F-box family protein (.1)
AT1G63330 44 / 0.0002 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT1G62590 43 / 0.0005 pentatricopeptide (PPR) repeat-containing protein (.1)
AT5G59900 43 / 0.0006 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G185200
[exp]
951 / 0 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1)
Potri.017G144900
[exp]
412 / 8e-138 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1)
Potri.004G074100
[exp]
408 / 3e-136 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1)
Potri.006G160300
[exp]
367 / 1e-116 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1)
Potri.006G124900
[exp]
43 / 0.0005 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.018G081700
[exp]
42 / 0.0008 AT5G21222 643 / 0.0 protein kinase family protein (.1)
Potri.006G271200
[exp]
42 / 0.001 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019535
[exp]
653 / 0 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1)
Lus10039049
[exp]
404 / 6e-135 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1)
Lus10043379
[exp]
392 / 2e-133 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1)
Lus10038809
[exp]
396 / 1e-131 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1)
Lus10038817
[exp]
361 / 5e-119 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1)
Lus10043223
[exp]
350 / 7e-111 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1)
Lus10014928
[exp]
295 / 3e-93 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1)
Lus10039117
[exp]
45 / 0.0002 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10038741
[exp]
43 / 0.0006 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0280 PIN PF11977 RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain
Representative CDS sequence
>Potri.009G145200.2 pacid=42772750 polypeptide=Potri.009G145200.2.p locus=Potri.009G145200 ID=Potri.009G145200.2.v4.1 annot-version=v4.1
ATGGCTATGGCTTCCTCATCCAACAAAAAGAAACCCAAAAAAAACCAAACCCCAGAATCGCAATTCAACTACAACCTCAATTTTTATTCAAAATCCAAAG
ACTTACACTCTGCTATTTCCCTCTACGACACGGCAATATCCCAAGACACTCGTCTCAATCAACACGGCTTCAACACTCTCCTTTACCTCTGTTCAGTATC
CCTCAATGACCCATCGACGGAAGAGTTGGCTTTACGATGTGGGCTTCGAATATTTGATCACATGGTGTCTAATGGGATCAAACCCAATGAAGCCTCAATC
ACAGCTGTTGCTAGACTAGCTGCTGCTAAAGGAGATGGTGATTATGCTTTTGACTTGGTTAAAAATGTTGGGGCTTATAATGAATTGCCAAGGTTGAGGA
CTTACGATCCTGCATTGTTTTGTTTCTGTGAGAAGTTGGAGGCTCATAAGGCTTATGAAGTGGAGGAGCATATGGGGAGTATGGGGGTGGGTTTAGAAGA
GGGGGAGATTGCGGCATTGTTGAAAGTTAGTGTAGAGAGTAGAAATGAGAAGAGGGTTTATGGGTATTTGCAGAAATTGAGGAAGATGGTGAGGCGTGTG
AGAGGAGAGACCGCGAAGGTCATTGAGCATTGGTTTGCGGTTTTTGAGGGTAGTGGGGTGGAATTGGATGTGGATTTGGTGAGAGAGGCGGTTTCGAGGA
ATGGGGGAGGGTGGCATGGGCTGGGATGGATTGGGAAAGGGAAGTGGGTGCTGAAGAGAGGGAGTGTGGATGTTGGTGGAAAGTGTTGTTGTTGCGGGGA
GCAGCTGGTTTCTGTTGATATTGATGATGATGAAACCGAGAGGTTTGCTGAATCTGTTGCTGGATTGGCTATGGAAAGGGAGGTTAATGCTAATTTTAGC
GAGTTTCAGAATTGGCTAGAAGAACATGCCAACTATGAAGCAATAGTAGATGGAGCAAATATTGGACTTTATCAGCAGAATTTTGCAGAAGGCGGATTTA
GCATTTCTCAGCTTGATGCTGTTGTAAAAGACCTATACAATCAGAGTGGGAAAAAATGGCCACTTATTATTATGCACAATAAGCGTCTTCGAGCACTCCT
ACAGAATCCTTCCACTAGAGAGCTGATTCAAGAGTGGATAGAAAAGGATGTTCTTTATACCACGCCTCAAGGCTCCAATGATGATTGGTATTGGCTATAT
GCTGCTGTCAAACTTAGATGCTTGCTAGTGACAAACGATGAAATGCGAGATCACATTTTCGAACTACTAGGAAGTGACTTCTTTATCAAGTGGAAAGAAA
GACATCAAGTTCGATATACTTTTGTCAAAGGGAAGCTGGAACTTCAAATGCCACCACTGTTTTCAGTAGTCATCCAGGAATCAGAACATGGATCATGGCA
TGTTCCTGTAGCAGGCAATGGTAATGATTCTCCTCAAAGCTGGCTGTGCGTTTCCCGGCCAAGAGCTTGTGATGCTCTTGAAGAAGATTCGTGCATGGAA
GGGTCAAAAGACAGTAATGATATTTGCTGCAATAGTAAGTTACTGAGCTTTGGCAGACCAGAAAGTCTTACAAGTTGCAAAAATAAACTCCAGAGCCAAG
CTTCTTTTCAAGAATCTGACAATAAAATCACAGCACTGACGTGCAAAAGGAAAGAGAGGTCCCCATCTCCTTCGTATCTACATGTTCCTTGTGACCAGCG
CCATCAGTAG
AA sequence
>Potri.009G145200.2 pacid=42772750 polypeptide=Potri.009G145200.2.p locus=Potri.009G145200 ID=Potri.009G145200.2.v4.1 annot-version=v4.1
MAMASSSNKKKPKKNQTPESQFNYNLNFYSKSKDLHSAISLYDTAISQDTRLNQHGFNTLLYLCSVSLNDPSTEELALRCGLRIFDHMVSNGIKPNEASI
TAVARLAAAKGDGDYAFDLVKNVGAYNELPRLRTYDPALFCFCEKLEAHKAYEVEEHMGSMGVGLEEGEIAALLKVSVESRNEKRVYGYLQKLRKMVRRV
RGETAKVIEHWFAVFEGSGVELDVDLVREAVSRNGGGWHGLGWIGKGKWVLKRGSVDVGGKCCCCGEQLVSVDIDDDETERFAESVAGLAMEREVNANFS
EFQNWLEEHANYEAIVDGANIGLYQQNFAEGGFSISQLDAVVKDLYNQSGKKWPLIIMHNKRLRALLQNPSTRELIQEWIEKDVLYTTPQGSNDDWYWLY
AAVKLRCLLVTNDEMRDHIFELLGSDFFIKWKERHQVRYTFVKGKLELQMPPLFSVVIQESEHGSWHVPVAGNGNDSPQSWLCVSRPRACDALEEDSCME
GSKDSNDICCNSKLLSFGRPESLTSCKNKLQSQASFQESDNKITALTCKRKERSPSPSYLHVPCDQRHQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G16650 PRORP2 proteinaceous RNase P 2 (.1) Potri.009G145200
[exp]
0 1
AT2G16650 PRORP2 proteinaceous RNase P 2 (.1) Potri.004G185200
[exp]
2.23 0.8389
AT4G18905 Transducin/WD40 repeat-like su... Potri.007G019833
[exp]
2.44 0.8092
AT1G14610 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2,... Potri.007G004100
[exp]
3.00 0.8034 Pt-VALRS.2
AT1G06530 PMD2 peroxisomal and mitochondrial ... Potri.005G201400
[exp]
6.92 0.7923
AT1G80620 S15/NS1, RNA-binding protein (... Potri.003G178800
[exp]
8.36 0.7785
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Potri.006G044100
[exp]
9.48 0.7882 Pt-NAP57.2
AT3G57150 ATNAP57, ATCBF5... homologue of NAP57 (.1) Potri.016G041200
[exp]
9.74 0.7884 Pt-NAP57.1
AT5G67610 Uncharacterized conserved prot... Potri.007G005500
[exp]
11.83 0.7548
AT3G07930 DNA glycosylase superfamily pr... Potri.014G187766
[exp]
14.07 0.7344
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Potri.013G011900
[exp]
14.83 0.7543

Potri.009G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.