Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03620 615 / 0 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 558 / 0 XSP1 xylem serine peptidase 1 (.1) AT5G59120 478 / 3e-159 ATSBT4.13 subtilase 4.13 (.1) AT5G59090 474 / 5e-158 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G58840 463 / 8e-154 Subtilase family protein (.1) AT5G59100 461 / 6e-153 Subtilisin-like serine endopeptidase family protein (.1) AT5G59190 452 / 7e-150 subtilase family protein (.1) AT3G46850 453 / 9e-150 Subtilase family protein (.1) AT5G58830 443 / 2e-146 Subtilisin-like serine endopeptidase family protein (.1) AT5G58820 443 / 2e-146 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G114500 [exp] 712 / 0 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G151900 [exp] 596 / 0 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.010G196800 [exp] 543 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.012G133200 [exp] 518 / 9e-174 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196900 [exp] 509 / 2e-171 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196700 [exp] 494 / 7e-167 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G074500 [exp] 491 / 1e-166 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1) Potri.009G038001 [exp] 472 / 5e-157 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.009G037900 [exp] 470 / 2e-156 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020582 [exp] 686 / 0 AT5G03620 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10020581 [exp] 648 / 0 AT5G03620 653 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009313 [exp] 564 / 0 AT4G00230 924 / 0.0 xylem serine peptidase 1 (.1) Lus10003254 [exp] 563 / 0 AT5G03620 711 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004685 [exp] 515 / 2e-173 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10009868 [exp] 508 / 4e-172 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10040253 [exp] 504 / 8e-170 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004683 [exp] 481 / 3e-161 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009867 [exp] 486 / 1e-155 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004682 [exp] 463 / 4e-155 AT5G59190 555 / 0.0 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.009G145600.2 pacid=42770924 polypeptide=Potri.009G145550.1.p locus=Potri.009G145600 ID=Potri.009G145600.2.v4.1 annot-version=v4.1 ATGGAGAAACAAACAATTTTTATCTTCAGTGTCTTGCTTCTAGCTACATTGTCATTGAGTCATGGGTCCAATGACAAGGAAAGAAAGGCTTACATTGTCT ACATGGGAAATGCACCTAAGACTAACCACATTTCTACTGCTGATCATCATCATGGTTTTCTCTCAGCAGCTCTTGGAGATGAGGATGTAGCTCGACGGAT TAGAATACACAGCTATGGAAAGAGTTTTGATGCATTCGCAGCGCATCTATTGCCAGAGGAAGCTGAGAGATTAAAACGGGATAAAAACGTGGTCTCAGTG TTTTTAAGAATGCCTCTTTCAGTAGAAAGAAAACCTCAAGTGGAGAGTAGCATTGTTGTTGGTGTTTTAGACACAGTTTATATTGATGCCCCAATCTTCG ATGACAAAGGTTTTGGGCCACCTCCATCATCATGGAAGGGTGCTTGCCAAAAAGGAAGCAACTTCACTGGCTGCAACAACAAGGTAATAGGCGCGAGGTC ATACGACTTAGAAAACAGACGTCCTGATGAAAACACCCCAGTTGATGACGAAGGCCATGGCACTCATACTTCCTCCACAGTAGCTGGCATCTCGGTTGAG GGCGCAAGCCTGTATGGCCTGGGCCAAGGCACTGCTCGTGGTGGAGTTCCGTCATCCCGGCTTGCAATCTACGAAGTATGCTATGAAGATGGGTGTAGTG ACATGGACATAATGGCTGCATTTGACGATGCTATCCAGGATGGTGCTGATATGATATCATTGTCAGTCGGTGGGCCAGTTTCAGATTCCTTCAACGATGC GATTGCGATCGGATCATTTCATGCAATGAAGAAAGGGATCCTGACTAGTTGTGCGGCAGGGAATGAAGGGCCAGCTTTAGCTTCAGTAGGAAATGTTGCT CCTTGGATTTTAACTGTTGGTGCTAGTGGCATGGATAGGCAGTTCAGGACTCCTCTTACCATTGGAAATAGCATAAAGACTTCTGGAATTTCTGTCAACA CCTTCACACCAAAAGCAAGAATGTACCCTCTTACCAGCGCAGCACAAGCATGGAACGATAGTGTGCAGATACCAGATGCCGCGGGGTATTGTTTTGTTGA GACTTTGGACAAAAACAAGGTCAAGGGAAAGATCGTGCTATGTAAAGGAGGATCAGACTCTGACATAAAAGAAATGGGTGGTGTTGGGATGATTGTAGCC TCCGATGATTCTCTAGACACAGGATTTACCTTGGTACTGCCTGCAGCAATTGTTAACATGAACCCTTATGCTGTCATATCCAAATCAAAAACTGTCAACG TTTCTGCTCCATTTGTGGCTTCCTTTTCATCTAGAGGGCCCAAACTGGTTTCTCCCACCATTTTGAAGCCAGATATTGTTGCACCTGGGATTGACATCCT AGCTGCTTATTCTAAACTTGTTACTGTGACCGGTGAACCCATCGACAACCGGGTTGAAGTGTACAACATAATATCCGGGACTTCAATGGCTTGCCCTCGT GCAACTGGCGCCGCTGCTTACATCAAGACATTCCATCCAGAGTGGTCTCCTGCTGCAATCAAATCCGCCCTCATGACCACTGCATCCGAAATGAAAATCG GGGATTTGTTTGCTGAATGGGGCTCTGGCGCGGGCCAAATTGACCCAACAAAGGCATTGGATCCAGGATTGATCTATGACTTGTCAGAAATAGATTATAT CCGTTTCCTGTGCAAGGCGAGCTACTCTGGAACAATACTAAGCATTGTCACAGGAGATCAAAATACAAACTGTTCGAGTATTTCTCCCTTTGGTGGCCAT GATGCTTTAAACTATCCATCCATGAATGTTCAGGTTGAAAATCCTCACTCTAGCACCACAGCTGCTTTCATACGGACAGTAACAAACGTAGGACCTGAAA AATCTACCTACAAGGCAGTGGTGAAGGCACCAATGGATGTCAAGGCCACTGTAACTCCTGATACATTGGTCTTCAATAAGGTTAATGAAAAGAAATTTTT CAAGGTGAAGGTACAAGGTCCACCAATGGAGGATACTCTTGTTTTGTCAGCTTCACTAGAATGGATTGACTCAAACAATCATAAGGTGAAGAGTCCTATT GTTATTTCTAACATGACTTTCTATTTTCTTTAG
AA sequence Show only first row Show all	>Potri.009G145600.2 pacid=42770924 polypeptide=Potri.009G145550.1.p locus=Potri.009G145600 ID=Potri.009G145600.2.v4.1 annot-version=v4.1 MEKQTIFIFSVLLLATLSLSHGSNDKERKAYIVYMGNAPKTNHISTADHHHGFLSAALGDEDVARRIRIHSYGKSFDAFAAHLLPEEAERLKRDKNVVSV FLRMPLSVERKPQVESSIVVGVLDTVYIDAPIFDDKGFGPPPSSWKGACQKGSNFTGCNNKVIGARSYDLENRRPDENTPVDDEGHGTHTSSTVAGISVE GASLYGLGQGTARGGVPSSRLAIYEVCYEDGCSDMDIMAAFDDAIQDGADMISLSVGGPVSDSFNDAIAIGSFHAMKKGILTSCAAGNEGPALASVGNVA PWILTVGASGMDRQFRTPLTIGNSIKTSGISVNTFTPKARMYPLTSAAQAWNDSVQIPDAAGYCFVETLDKNKVKGKIVLCKGGSDSDIKEMGGVGMIVA SDDSLDTGFTLVLPAAIVNMNPYAVISKSKTVNVSAPFVASFSSRGPKLVSPTILKPDIVAPGIDILAAYSKLVTVTGEPIDNRVEVYNIISGTSMACPR ATGAAAYIKTFHPEWSPAAIKSALMTTASEMKIGDLFAEWGSGAGQIDPTKALDPGLIYDLSEIDYIRFLCKASYSGTILSIVTGDQNTNCSSISPFGGH DALNYPSMNVQVENPHSSTTAAFIRTVTNVGPEKSTYKAVVKAPMDVKATVTPDTLVFNKVNEKKFFKVKVQGPPMEDTLVLSASLEWIDSNNHKVKSPI VISNMTFYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03620			Subtilisin-like serine endopep...		Potri.009G145600 [exp]	0	1
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155300 [exp]	10.67	0.9963
					Potri.002G184550 [exp]	16.24	0.9956
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117200 [exp]	21.49	0.9956
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.003G032400 [exp]	26.94	0.9956
					Potri.011G073141 [exp]	28.14	0.9956
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	29.73	0.9955
AT3G23550			MATE efflux family protein (.1...		Potri.011G117400 [exp]	30.85	0.9955
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Potri.019G046201 [exp]	31.22	0.9954
AT4G29280		LCR22	low-molecular-weight cysteine-...		Potri.001G044800 [exp]	32.24	0.9954
AT2G33420			Protein of unknown function (D...		Potri.010G068000 [exp]	33.58	0.9157

Compare expression of checked genes

Potri.009G145600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.