Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) AT5G54370 254 / 2e-80 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 241 / 2e-75 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60520 238 / 1e-74 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 239 / 1e-73 late embryogenesis abundant protein-related / LEA protein-related (.1) AT4G27400 233 / 3e-72 Late embryogenesis abundant (LEA) protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097400 [exp] 410 / 2e-135 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.012G145400 [exp] 251 / 3e-79 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.011G127900 [exp] 241 / 1e-75 AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 233 / 6e-72 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012500 [exp] 224 / 7e-69 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.001G405650 [exp] 0 / 1 AT5G54370 350 / 7e-121 Late embryogenesis abundant (LEA) protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021837 [exp] 306 / 3e-101 AT3G19430 321 / 2e-106 late embryogenesis abundant protein-related / LEA protein-related (.1) Lus10031297 [exp] 259 / 5e-82 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10038588 [exp] 242 / 1e-75 AT5G54370 481 / 6e-172 Late embryogenesis abundant (LEA) protein-related (.1) Lus10020169 [exp] 239 / 5e-74 AT5G54370 479 / 5e-170 Late embryogenesis abundant (LEA) protein-related (.1) Lus10026972 [exp] 236 / 2e-73 AT5G54370 479 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Lus10033540 [exp] 233 / 3e-72 AT5G54370 396 / 2e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10036107 [exp] 232 / 6e-72 AT5G60520 437 / 1e-154 Late embryogenesis abundant (LEA) protein-related (.1) Lus10017577 [exp] 229 / 9e-71 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 223 / 4e-69 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 224 / 2e-68 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [poplar] [flax] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Potri.009G145700.1 pacid=42770871 polypeptide=Potri.009G145700.1.p locus=Potri.009G145700 ID=Potri.009G145700.1.v4.1 annot-version=v4.1 ATGGCTCGATTATTCATATGTTTACTCGTGATTTTCCTAGCCATTGTGGCTGAGGCAGCTACTCAGAAGCCAAAGAAAGCAAAAAAGTGCCATGACAAGA AGAACTACCCTGTATGTTTCAAAACTAAAAACCTCTATTGCCCACCACAGTGTCCTCGTGACTGTTATGTGGATTGTGCTACATGCACCCCTGTTTGCTC AAAGCCATCTAAATCCCCACCCTTTTTGCCACCACCACCACATTCTCTGAGCCCACCTCCAACTAGGTCCACCCCACCTTCTCTGAGCCCACCTCCAACT AGGTCCACCCCACCTTCTCTGAGCCCACCTCCAACAACTTCCACCCCACCTTTGAGCCCACCTCCAACTACGTCCACCCCACCTTTGAGCCCACCTCCAA CAACTTCCACCCCTCCTCCCACCATTTCCACTCCACCACCTCCTCCTCCTACTAGTACTCCACCTTTGAGCCCACCCCCCACTGATTTCACCCCACCTCC ATCAAGCACCCCACCTCCTGCAACTACTACACCCCCTGCTCAAAATCCTCCACCACCACCAGATTCAAGTGAATCAGCTCCAAAGAGAGCTAGGTGCAAG AACAGGAACTATGCCACTTGCTATGGTCAGGAGTACACCTGTCCTAGTGCCTGCCCCAATCAATGTGAGGTTGATTGTACCATTTGCAAGGCTGTTTGCA ACTGTGACCGGCCAGGTGCTGTGTGCCAAGACCCGCGATTCATCGGTGGAGATGGAATCACCTTCTACTTCCATGGAAAAAAAGACCGAGACTTCTGCAT AGTTTCTGATTCTAACTTACACATCAATGCTCACTTCATCGGTCGCCGCAACGAAAAGTTGACGAGGGACTTCACTTGGGTGCAATCTCTAGGCATTCTC TTTGGCACCCATAAACTCTTCATCGGTGCTCAAAAGACAGCTACATGGGATGACTCCGTCGACCGCCTTTCGTTAGCCTTAGATGGAGAGCCCATATACC TCCCTGATGGGGAAGGCATGAAGTGGAAGGCAGAAATATCACCAAGTGTGACCATCACAAGGTCTAGTGACGCAAATGCTGTAGTCATCGAAGCGGAAGA CAATTTCAAGATCAAGGCAGCCGTGGTGCCTATTACACAGAAAGATTCAAGAATTCATAGCTATGGCATTGCCTCAGAGAATTGCTTTGCACATCTTGAT TTGAGCTTCAAGTTCTACAAATTGAGTGGTGATGTAAATGGTGTTCTAGGCCAGACATATGGTAGCAACTATGTGAGTAGGGTTAAGATGGGGGTTCTCA TGCCTGTTTTGGGCGGTGAAAAGGAATTTGCATCTTCAAATATTTTTGCTACAGACTGTGCTGTTGCTCGATTTAGTGGTCAGCATCCTAGTAGCAATTC TTCGGAGAATTTCGAGTTTGCCAACTTACATTGTGCTAGTGGAATCGATGGTCGTGGAGTTGTCTGCAAGAGATAA
AA sequence Show only first row Show all	>Potri.009G145700.1 pacid=42770871 polypeptide=Potri.009G145700.1.p locus=Potri.009G145700 ID=Potri.009G145700.1.v4.1 annot-version=v4.1 MARLFICLLVIFLAIVAEAATQKPKKAKKCHDKKNYPVCFKTKNLYCPPQCPRDCYVDCATCTPVCSKPSKSPPFLPPPPHSLSPPPTRSTPPSLSPPPT RSTPPSLSPPPTTSTPPLSPPPTTSTPPLSPPPTTSTPPPTISTPPPPPPTSTPPLSPPPTDFTPPPSSTPPPATTTPPAQNPPPPPDSSESAPKRARCK NRNYATCYGQEYTCPSACPNQCEVDCTICKAVCNCDRPGAVCQDPRFIGGDGITFYFHGKKDRDFCIVSDSNLHINAHFIGRRNEKLTRDFTWVQSLGIL FGTHKLFIGAQKTATWDDSVDRLSLALDGEPIYLPDGEGMKWKAEISPSVTITRSSDANAVVIEAEDNFKIKAAVVPITQKDSRIHSYGIASENCFAHLD LSFKFYKLSGDVNGVLGQTYGSNYVSRVKMGVLMPVLGGEKEFASSNIFATDCAVARFSGQHPSSNSSENFEFANLHCASGIDGRGVVCKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19430			late embryogenesis abundant pr...		Potri.009G145700 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.001G105400 [exp]	1.41	0.9262
AT1G04040			HAD superfamily, subfamily III...		Potri.010G066500 [exp]	4.24	0.9092
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	11.22	0.9213
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.019G125600 [exp]	12.12	0.9197
AT3G45650		NAXT1	nitrate excretion transporter1...		Potri.008G045100 [exp]	12.72	0.8945
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	13.56	0.9130	CYP712.2
AT3G05390			unknown protein		Potri.013G019400 [exp]	19.51	0.8373
					Potri.002G012433 [exp]	21.49	0.9007
AT1G02360			Chitinase family protein (.1)		Potri.002G186500 [exp]	21.90	0.9121
					Potri.001G388200 [exp]	23.23	0.8681

Compare expression of checked genes

Potri.009G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.