Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27680 632 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 97 / 4e-22 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 77 / 2e-15 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 62 / 2e-10 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 57 / 9e-09 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 55 / 4e-08 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 53 / 2e-07 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 50 / 8e-07 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 49 / 2e-06 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 48 / 5e-06 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G207100 [exp] 100 / 1e-23 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 97 / 5e-22 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 95 / 1e-21 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 78 / 1e-15 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G167400 [exp] 73 / 5e-14 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 71 / 3e-13 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 68 / 2e-12 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 64 / 4e-11 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G042100 [exp] 61 / 5e-10 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020578 [exp] 612 / 0 AT2G27680 595 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006267 [exp] 511 / 0 AT2G27680 494 / 6e-175 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10020579 [exp] 112 / 5e-30 AT2G27680 111 / 2e-30 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10016327 [exp] 81 / 2e-16 AT1G06690 510 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10002744 [exp] 78 / 1e-15 AT1G06690 496 / 9e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10028045 [exp] 67 / 3e-12 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 65 / 3e-11 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 63 / 1e-10 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 63 / 2e-10 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 62 / 2e-10 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.009G146000.1 pacid=42772325 polypeptide=Potri.009G146000.1.p locus=Potri.009G146000 ID=Potri.009G146000.1.v4.1 annot-version=v4.1 ATGGCAGCGTCCTTACACCACGCTGTCCCCAAACTCACTATAACAACTGCAGCTCGTCCCGAGTCAAGATGGCTCAGTTTCAATCCAGTCAGGTGCTGCG CGCCGACGACAACAACAACCACAACTGACGCCGGGGCTCATCGAATCACGGTGAAGAATGGGAACGACTCGCTTGACATATGCAGAGTCCTTAACGGTAT GTGGCAGACTAGCGGCGGTTGGGGCCGAATCGACCGAGACGACGCCGTCGAGGCAATGCTTCGCTACGCTGACGCTGGTCTCTCCACCTTCGACATGGCC GATCACTATGGGCCTGCTGAAGATCTGTATGGCATTTTTATCAACCGACTTCGCAGAGAGCGTCCACCAGAAGTCCTGGATAGGGTTAGAGGCCTTACAA AATGGGTTCCACCACCCGTTAAAATGACTGGTAGCTATGTGAGGCAGAACATTGACATTTCAAGGAAGAGGATGGATGTGTCATCCTTGGACATGCTTCA GTTTCATTGGTGGGACTATTCTAATCCTGGCTACCTTGATGCCCTTAAACACTTGAATGACCTAAAGGAAGAAGGTAAAATTAAGACTGTTGCTTTGACA AATTTCGACACAGAGAGATTACAAATAATTTTAGAAAATGGAATTCCTGTTGTCAGCAATCAGGTGCAACATTCACTTGTGGACATGCGTCCTCAACAAA AAATGGCAGAGCTTTGTCAGCTTACTGGAGTTAAACTTATCACGTATGGGACGGTAATGGGTGGACTGTTATCTGAGAAATTCCTTGACACTAACTTATC CATTCCTTTTTCTGCCCCACCATTAAATACTCCTTCCTTGCAGAAGTACAAAAGGATGGTTGATGCTTGGGGAGGATGGAGTCTGTTCCAAAGTCTGCTG CGGACACTTAATAAGATAGCCTCTAAACACGGTGTCTCCATTCCAACTGTAGCGGTGAAGTACATATTAGATCAGCCAGCAGTGGCAGGATCCATGATAG GTGTTCGACTTGGTTTGGCTGAACACATCAATGACGCCAATGCTGTGTTTTCACTGGTCCTCGACGAGGAGGATATGAACAGCATACAGGAAGTTTCCAA AAAAGGGAAGGATCTGTTAAAAGTGATTGGCGACTGCGGGGATGAGTATAGGCGTATATGA
AA sequence Show only first row Show all	>Potri.009G146000.1 pacid=42772325 polypeptide=Potri.009G146000.1.p locus=Potri.009G146000 ID=Potri.009G146000.1.v4.1 annot-version=v4.1 MAASLHHAVPKLTITTAARPESRWLSFNPVRCCAPTTTTTTTDAGAHRITVKNGNDSLDICRVLNGMWQTSGGWGRIDRDDAVEAMLRYADAGLSTFDMA DHYGPAEDLYGIFINRLRRERPPEVLDRVRGLTKWVPPPVKMTGSYVRQNIDISRKRMDVSSLDMLQFHWWDYSNPGYLDALKHLNDLKEEGKIKTVALT NFDTERLQIILENGIPVVSNQVQHSLVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFSAPPLNTPSLQKYKRMVDAWGGWSLFQSLL RTLNKIASKHGVSIPTVAVKYILDQPAVAGSMIGVRLGLAEHINDANAVFSLVLDEEDMNSIQEVSKKGKDLLKVIGDCGDEYRRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	0	1
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	1.41	0.9867
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	2.82	0.9725	SIGF.1
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	5.47	0.9734
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	6.92	0.9730
AT3G11210			SGNH hydrolase-type esterase s...		Potri.006G100300 [exp]	7.07	0.9717	CPRD49.3
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Potri.014G148700 [exp]	7.81	0.9511	Pt-PDS.1
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.015G074100 [exp]	8.00	0.9570	Pt-ALDH1.3
AT5G38520			alpha/beta-Hydrolases superfam...		Potri.019G063900 [exp]	8.48	0.9699
AT2G18710		SCY1	SECY homolog 1 (.1)		Potri.006G175300 [exp]	8.94	0.9645
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	9.79	0.9714	Pt-HCF101.1

Compare expression of checked genes

Potri.009G146000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.