Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44600 1095 / 0 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G36130 175 / 2e-51 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 171 / 3e-50 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 150 / 4e-41 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT5G67530 155 / 3e-40 ATPUB49 plant U-box 49 (.1) AT4G33060 151 / 2e-39 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G62030 145 / 3e-39 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT3G56070 139 / 6e-38 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 137 / 1e-37 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G21130 136 / 4e-37 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149700 [exp] 174 / 3e-51 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 174 / 4e-51 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 170 / 9e-50 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 160 / 7e-45 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.002G185200 [exp] 159 / 3e-44 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.005G148900 [exp] 164 / 2e-43 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.001G060200 [exp] 157 / 2e-43 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.009G106200 [exp] 146 / 2e-38 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.002G021500 [exp] 139 / 4e-38 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020573 [exp] 1135 / 0 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 1132 / 0 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10009237 [exp] 170 / 3e-49 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 168 / 4e-49 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 165 / 2e-47 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007794 [exp] 162 / 2e-42 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10011330 [exp] 153 / 2e-42 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 152 / 1e-41 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10004731 [exp] 159 / 2e-41 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10023860 [exp] 150 / 5e-40 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.009G146400.1 pacid=42771351 polypeptide=Potri.009G146400.1.p locus=Potri.009G146400 ID=Potri.009G146400.1.v4.1 annot-version=v4.1 ATGGAGGAGGAGCCAAAAAACGGCAACTCGGAGACGCCAGTGGAGAACGACGAAGATGCAGTTATTGGACCTGGTCCAGCCCCTAAAGCCCGAGCCAAAC GTCCTCTCCAGTTCGAGCAAGCTTACCTCGATTCCCTTCCTTCTGCAAACATGTACGAGAAAAGCTATATGCATCGAGATGTGGTTACGCATGTTGCAGT TTCCGCAGCTGATTTTTTCATCACTGGAAGTGTTGATGGGCATTTGAAATTTTGGAAGAAAAAGCCTATTGGCATTGAATTTGCTAAACATTTTAGATCC CACCTTGGTCCCATTGAAGGCCTAGCGGTTAGCTTGGATGGCCTGCTTTGTTGCACGATTTCAAATGATCAATCTGTGAAAATATATGATGTTGTCAATT ATGACATGATGGCCATGATCCACCTTCCATATGTTCCTGGTAGTGCAGAATGGGTCTATAAACAAGGGGATGTTAAAGCTAGGCTTGCCATAAGTGATCG GAATTCCTTAGTTGTGCATATATATGATGCACGAGCTGGTTCAAATGAACCAATCATCTCAAAAGAGATACACCTTGAGCCGGTTAAAGTTATGAAGTAC AACCCTGTATTTGACACGGTAATATCTGTTGATGCAAAGGGACTTATTGAATACTGGAGTCCCACCACGCTTAAGTTCCCAGAAAGCGAGGTGAAGTTTA GATTGAAAAGTGATACTAATCTATTTGAAATTGTGAAGTGTAAAACAAGTGTTTCCACAATGGAGGTCAGCCCAGATGGTAAGCAGTTTTCCATTACATC ACCTGATCGAAGGATACGTGTATTTTGGTTTAGAACGGGTAAACTAAGAAGAGTTTATGATGAATCTCTTGAGGTGGCTCAAGATCTTCAGAGAAGTGAT GCTCCCATGTACCGGTTGGAGGCTATTGATTTTGGGCGAAGAATGGCTGTTGATAAAGAAATTGAAAAGACAGAAACTGCACCACAACCAAATGCTATTT TTGACGAAAGCTCAAACTTCCTTATATATGCCACCCTCCTAGGAATAAAAGTAGTGAATTTACAGACCAATAAAGTTGCCAGAATTCTTGGAAAGGTGGA GAACAATGACAGATTCTTGCAAATTGCATTGTATCAAGGTGACCGAAGCAGCAAGAAAGTCAGAAAAATTCCTACAGCTGCAGCAAATGTCAATGAGAGC AAAGACCCTTTAACAGATCCCACTCTCTTGTGTTGTGCTTTCAAGAAACACAGAATTTATCTATTCAGCCGCCGAGAACCAGAGGAGCCTGAGGATGCAA CTAAGGGACGGGATGTGTTTAATGAAAAGCCTCCACCAGATGAACTTTTGGCTGTATCAGATATAGGAAAAGCAGCGACTACATCTCTTCCTGACACTGT GATTCTGCACACTACAATGGGAGACGTTCACATGAGACTGTACCCTGAAGAATGTCCAAAAACTGTAGAGAATTTTACAACGCACTGCCGAAATGGCTAC TATGATAATCTTATCTTTCACCGTGTCATCAAAGGTTTCATGATACAAACAGGAGACCCATTGGGAGATGGCACTGGTGGGCAGTCTATTTGGGGAAGGG AATTCGAGGATGAGTTTCACAAAAGTTTACGACATGACAGGCCTTTCACAGTATCAATGGCAAACGCAGGCCCAAATACAAATGGTTCCCAGTTCTTTAT CACCACAGTGGCCACTCCATGGCTGGACAACAAGCATACAGTGTTTGGTAGAGTTGCGAAGGGAATGGATGTTGTACAGGCTATTGAGAAGGTGAAGACA GACAGAGGAGACACACCATACCAAGATGTAAAAATCCTGAACGTGACTGTTCCCAAGTCTTAG
AA sequence Show only first row Show all	>Potri.009G146400.1 pacid=42771351 polypeptide=Potri.009G146400.1.p locus=Potri.009G146400 ID=Potri.009G146400.1.v4.1 annot-version=v4.1 MEEEPKNGNSETPVENDEDAVIGPGPAPKARAKRPLQFEQAYLDSLPSANMYEKSYMHRDVVTHVAVSAADFFITGSVDGHLKFWKKKPIGIEFAKHFRS HLGPIEGLAVSLDGLLCCTISNDQSVKIYDVVNYDMMAMIHLPYVPGSAEWVYKQGDVKARLAISDRNSLVVHIYDARAGSNEPIISKEIHLEPVKVMKY NPVFDTVISVDAKGLIEYWSPTTLKFPESEVKFRLKSDTNLFEIVKCKTSVSTMEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSD APMYRLEAIDFGRRMAVDKEIEKTETAPQPNAIFDESSNFLIYATLLGIKVVNLQTNKVARILGKVENNDRFLQIALYQGDRSSKKVRKIPTAAANVNES KDPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPDELLAVSDIGKAATTSLPDTVILHTTMGDVHMRLYPEECPKTVENFTTHCRNGY YDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKT DRGDTPYQDVKILNVTVPKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	0	1
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	1.41	0.9161	Pt-EMB177.4
AT5G13660			unknown protein		Potri.006G082800 [exp]	2.82	0.9069
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.004G208900 [exp]	2.82	0.9044
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	3.16	0.9054
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	3.16	0.9031
AT1G15780			unknown protein		Potri.001G204900 [exp]	3.87	0.9133
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	5.91	0.9045	Pt-FHY3.2
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.010G186200 [exp]	6.63	0.8945
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.001G026800 [exp]	8.83	0.8893
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	8.83	0.9046

Compare expression of checked genes

Potri.009G146400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.