Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 150 / 4e-38 unknown protein AT1G78810 51 / 5e-06 unknown protein AT5G23570 47 / 9e-05 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235700 [exp] 255 / 3e-70 AT3G22430 125 / 4e-30 unknown protein Potri.008G024500 [exp] 231 / 2e-62 AT3G22430 127 / 1e-30 unknown protein Potri.010G087400 [exp] 173 / 8e-46 AT3G22430 418 / 3e-142 unknown protein Potri.008G152900 [exp] 168 / 4e-44 AT3G22430 409 / 2e-138 unknown protein Potri.T045700 [exp] 49 / 3e-05 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.018G137400 [exp] 49 / 3e-05 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037101 [exp] 45 / 0.0004 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188000 [exp] 44 / 0.001 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006278 [exp] 372 / 2e-113 AT3G22430 132 / 2e-32 unknown protein Lus10020567 [exp] 360 / 3e-113 AT3G22430 129 / 8e-33 unknown protein Lus10021918 [exp] 129 / 1e-31 AT3G22430 298 / 6e-97 unknown protein Lus10041203 [exp] 66 / 4e-12 AT3G22430 186 / 2e-57 unknown protein Lus10021917 [exp] 44 / 0.0001 AT3G22430 125 / 2e-34 unknown protein Lus10041204 [exp] 45 / 0.0002 AT3G22430 147 / 2e-40 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain
Representative CDS sequence Show only first row Show all	>Potri.009G147201.1 pacid=42771563 polypeptide=Potri.009G147201.1.p locus=Potri.009G147201 ID=Potri.009G147201.1.v4.1 annot-version=v4.1 ATGAAACATCAACGACACAGCAATGTTTACATCAGTAGACCTTTGTCTCCACCACGGCAGACGCCGCGTTGCGGAATAAGAGACTGTGAGCTTGAAGAAA ACCGCCGGTTTTCTCATGCTAATCGGTCTCGAAGTCCGGCGAGGAGAGAGAACCAACAACATGGCAATGTCAGGACACGGGAAGAAGTCGAAGGAAACAG GCGGTTTTCACGTTCTTATCGGTCTCGAAGTCCGGTTTGGTCAGAGCAACACCGGTCTGGACAGGCTGGGAGAGAATACCAACAGCGTGGCTATGTGAAA ACTCAAACCCCACCTCGAAAGCAGGATGAAATCGAAGGGAACAGACGGTTTTCACGTTCTCATCGGTCTCGAAGTCCGGTTTGGGCTGAACCACCCAGGT CTAGACAGGATGGGAGAGAACGCCAACAGCTTGGCGATGTGAGAACTCGAACCCCACCTCGAAAGCAGGATGAAATTGAAGGGAACCGGCGGTTTTCACG TTCTCACCGGTCTCGAAGTCCTCTTTGCGCTGAACCACCCAGGTCTAGACAGGATGGGAGAGAACACCAACAGCATTGCGATGCGATAACTAGAATCCCA CCTCGAAAGCAGGATGAAATCGAAGGGAACAGACGGTTTTCACTTTCTCATCGGTCTCGAAGTCCGGTTTGGGCTGAACCACACAGGTCTAGACAAGATG GGAGAGAACACCAACAGCATGGCGATGTCAGGATTCGGTCTCCACCTTGGAATCGTGAAGAAAGAGTAACAGTCATGCGGTCTTCTGGTTTAAATCAGCC AGTTGAGCCGGACCCATTGGGTTCGGTACATAGGAGAGAGGGTGATAGGCGGTTTAATGAAGAGAGAGATGAGCATTTGGAAAAACTGTCACAGTTTTGC GAGTCTTTGTCGAAGAAAGGATCAACCTTCAACAAGTTTCAATGGGACAATTTACTAGCACAAGAAAACAAACCCAAGAATGCAAGTGCAAATTTGGGTC CTTCAGTTGATCCTTGGAAAACCAGTGGGGTTGTTGTTGATTCTGGTGTGGTCCCCACATCAATGTCAATGGAGTATGTGGGGCCAAGAAGCCATTTTGA GTGCTGCTTGGATGCCACAACAAGGGGTGACAATCATGGGCTTATTGATGGTGGCATTGGTAATGTCAATGTGTCGCCTTTTGGCGAACCTGTTAGGGAG AGGTTTGAAAGGAGAAGTAGTAGTGTTATCGACCCAATTGTGGACAAAGTTGAAAGGAATGATGCTTCTGTAGTAGGGCATCATTATGTTGAAAGGGTTA GGGTGTCACATTCAATGAAGCAAGAGGAGAAAGATGTGAAAGATTGTAGGAATGATCATGGAGACTATGGGGTTTTTATTAGGGAGAGGGGAAATATGGG TTCACTTCCCATGGAATCCTCATTTCAGAACGTGAAAAATGTCAGAGGAAAGACTTGCTTTGTTGACGTGATTGATGGAAATGATGCTGCTCTTAATGAT CACATGAGAGAGAACAGGATGTTGGACAATCCTGGGGTTTTTGGAGAAAGGTACCCTTATGCTGAACGGGTTAGTGTTTTCCATTCAATGGAACTAGATG GGAGAGATAAGGACTGCAGAAGTGATCCTGTGGAGTATGGATTTATTCAAGATAAGAATGAGTCTCATTTGAGGAAAACTTTTGTTCGTGAGCGAGCTAA TGTGGGGTCACTGCCCATGGAATCCCCATGTGAAAACATGAGTGTGTTAAGGAAAAGGACTTGCTTAGTTGACCCAATTGCTGACATGATTGATGGAAAT GATGCTGCTCTTAGAGAGAGAATGAGAACAAGCAGGATTCTGGACAATCTTGGTGGTTTCCAAGAAAGACCTATCAATGTTAGCAGGGTGTCGTTGCGTT CATTCGAGCAAGATGATAAAGATGAGGAAGCTTTGGTTTCTAGGAATGACAACATGTACTATGAGATGGAAGAGTGTTTGGATCCTGAGAACTTGAAGTC AACAGAGGAATGTGGTTTTGAAGGGGATGGGGGTAGCATTGGGTCTTGTGGAGATGGTTATAAGAGGGTGCCGGTATCATATGATGGACTGTATGCGACC GAGAATAGTTCGCAAAGGGTGGTCATGGAACAGCAGCCTGGTATTCATGGGCAATCAGAATACATGCTCGACGGACAGCATATTTTCGACATGGAAGCTA GCATTCATGATCAAAGAAGTCTGATATCTTTTGATTGGAATGACCTTGAACAGATGCATGATGTGAGCTATAGAGATGGAAAGTGGACTAATCAGGATAA TGAACAATATTCTTCATTGGAGAACTCGGGATTGAGGCATTTGCAAAGTGGGAGGGATGGATGGATGATTGATGACAGGGCAAGCCATGAAGATGCCTAT TCTTTCCATCCCTTACCTTCTACAGATAGGCATCTAAGCGAGCTTGTTGAACCTCCGAAAAGCAATGTGAAGCAGCGTTTGGGGCCTCTGCGAAATGTGA AGCAGCGTTTGGGTTCTGTGCGAAATGTGAAGCAGCGTTTGGGTTCTGTGCGAAATGTGAAGCAGCGTTTGGGGCCTGCTCAAAATGCGTGTAAGAGCTT GGGGGCTGCTCAGAAAGCTCAAAGGAAACTTCCTTGGGTTAAGATATATGAAGAACAATGCCTGTATGATTCTGACGGAACTCATAATATTCAAGGAGTA AAATCCTCAGAAATGAAGAAGAAACATGCAAATACTGAGGCGTCTAAGGACTCTGATGAGTTCATGCATCTGGTGCAAAGGGCTTTCTTAAAGTTCTCCA AACTTTTGAACGAGAATTCGGCTAACAAAAGGAAATACCAGGAGAAGGGAGGAAATGCTAATTTGAAGTGCTGCGTATGTGGCAGCAACTCCAAAGACTT TGTGGACACATTGAGCTTGGCACAACATACGGTCATGTCTTCTAAGGGCAGTTTCAGAGCAGAGCATTTGGGTCTTCACAAAGCGCTTTGTGTGTTGATG GGATGGAATAGTGCTGGATTCCCTAACAGTCAATGGGTTCGGCAGATATTGCCTGAGGTCGAAGCCTCATCACTGAAAGAGGATCTCATCATATGGCCGC CAGTTGTTGTTATACACAACAGATCCATAGCAAATGATAATCCAGATGAACGGATTATTGTAAGTGTTGAAGGGCTCAGACATATTCTCAGAGGTATGGG TTTTGGTCAAGGGATAACCAACATCTGCCGTGGCAAAGCTGCAAATCAGAGTACTATGGTGGTCATCTTCGGTCAGACCTTTTCTGGGCTGCAAGGAGCC GAGAGGCTTCACAAGCTTTATGCTGAGAGCAAACGTGGAAGGACCGAGTTCCAGCAAATTGGTCTACACGGGAGTCTGCAAACTCAAGGGGTGTCATCAA ACACAAAAGAAAACGTTCTATATGGCTATCTGGGAATTTCAATTGATCTGGATAAACTTGATTTTGAGATCAAAAAACGATGTGTTGTGAAGAGCAAGAA GGAGATAAAGGCTGTTGCAGATTTTGCTCTGAACACTGAATGA
AA sequence Show only first row Show all	>Potri.009G147201.1 pacid=42771563 polypeptide=Potri.009G147201.1.p locus=Potri.009G147201 ID=Potri.009G147201.1.v4.1 annot-version=v4.1 MKHQRHSNVYISRPLSPPRQTPRCGIRDCELEENRRFSHANRSRSPARRENQQHGNVRTREEVEGNRRFSRSYRSRSPVWSEQHRSGQAGREYQQRGYVK TQTPPRKQDEIEGNRRFSRSHRSRSPVWAEPPRSRQDGRERQQLGDVRTRTPPRKQDEIEGNRRFSRSHRSRSPLCAEPPRSRQDGREHQQHCDAITRIP PRKQDEIEGNRRFSLSHRSRSPVWAEPHRSRQDGREHQQHGDVRIRSPPWNREERVTVMRSSGLNQPVEPDPLGSVHRREGDRRFNEERDEHLEKLSQFC ESLSKKGSTFNKFQWDNLLAQENKPKNASANLGPSVDPWKTSGVVVDSGVVPTSMSMEYVGPRSHFECCLDATTRGDNHGLIDGGIGNVNVSPFGEPVRE RFERRSSSVIDPIVDKVERNDASVVGHHYVERVRVSHSMKQEEKDVKDCRNDHGDYGVFIRERGNMGSLPMESSFQNVKNVRGKTCFVDVIDGNDAALND HMRENRMLDNPGVFGERYPYAERVSVFHSMELDGRDKDCRSDPVEYGFIQDKNESHLRKTFVRERANVGSLPMESPCENMSVLRKRTCLVDPIADMIDGN DAALRERMRTSRILDNLGGFQERPINVSRVSLRSFEQDDKDEEALVSRNDNMYYEMEECLDPENLKSTEECGFEGDGGSIGSCGDGYKRVPVSYDGLYAT ENSSQRVVMEQQPGIHGQSEYMLDGQHIFDMEASIHDQRSLISFDWNDLEQMHDVSYRDGKWTNQDNEQYSSLENSGLRHLQSGRDGWMIDDRASHEDAY SFHPLPSTDRHLSELVEPPKSNVKQRLGPLRNVKQRLGSVRNVKQRLGSVRNVKQRLGPAQNACKSLGAAQKAQRKLPWVKIYEEQCLYDSDGTHNIQGV KSSEMKKKHANTEASKDSDEFMHLVQRAFLKFSKLLNENSANKRKYQEKGGNANLKCCVCGSNSKDFVDTLSLAQHTVMSSKGSFRAEHLGLHKALCVLM GWNSAGFPNSQWVRQILPEVEASSLKEDLIIWPPVVVIHNRSIANDNPDERIIVSVEGLRHILRGMGFGQGITNICRGKAANQSTMVVIFGQTFSGLQGA ERLHKLYAESKRGRTEFQQIGLHGSLQTQGVSSNTKENVLYGYLGISIDLDKLDFEIKKRCVVKSKKEIKAVADFALNTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22430			unknown protein		Potri.009G147201 [exp]	0	1
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.012G143200 [exp]	3.87	0.6803
AT3G07660			Kinase-related protein of unkn...		Potri.002G217000 [exp]	6.32	0.6991
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	6.85	0.7389
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	11.09	0.7104
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G146300 [exp]	12.12	0.6697
AT4G38380			MATE efflux family protein (.1...		Potri.004G183600 [exp]	23.66	0.6109
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	24.00	0.6801	CHR919
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Potri.007G025300 [exp]	26.53	0.6509
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Potri.001G269700 [exp]	30.98	0.6151	Pt-GR1.2
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.004G208100 [exp]	35.94	0.6085

Compare expression of checked genes

Potri.009G147201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.