Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) AT3G09980 167 / 2e-53 Family of unknown function (DUF662) (.1) AT2G36410 162 / 5e-51 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 160 / 1e-50 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT5G03660 140 / 1e-42 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G52900 133 / 7e-40 Family of unknown function (DUF662) (.1) AT2G36355 123 / 3e-36 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186900 [exp] 256 / 3e-88 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.006G115400 [exp] 164 / 5e-52 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 130 / 4e-39 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019529 [exp] 195 / 4e-64 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 191 / 9e-63 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10027724 [exp] 166 / 1e-52 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 166 / 2e-52 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10023876 [exp] 156 / 4e-49 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 135 / 4e-40 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10034160 [exp] 117 / 1e-33 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 115 / 3e-32 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [poplar] [flax] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Potri.009G147500.5 pacid=42772051 polypeptide=Potri.009G147500.5.p locus=Potri.009G147500 ID=Potri.009G147500.5.v4.1 annot-version=v4.1 ATGACAACACAAAAACCAATATTGGAGCAACAAATGTCACAAATGCAGATCAAATTGAAGAGCTCAGGCATTATCAGCAATTACAATGAAAGCTCACTGT TAAGGGATGAAAAGGATGAGGAGATGTCAAGGTCAGCATTGGCCATGTTTAGGGCAAAGGAAGAAGAGATTGAGAAGAAGAAGATGGAAGTCAGAGACAA GGTTCATGCTCACCTAGGACGTGTGGAGGAAGCAACCAAACGTTTAGCAGAAATTCGTGAAGAGCTTGAAGCTCTGACGGATCCAATGAGGAAGGAAGTT TCGATGGTACGTAAGAGGATTGACACAGTCAACAGAGAGCTGAAGCCTCTGGGCCTGAGTTGTCAGAAGAAGGAGAGAGAATACAAAGAAGCCCTTGAAG CTTTTAACGACAAGAACAAAGAAAAAGCTCAGCTTGTTTCCAAATTAGTGGAGCTGGTGGGTGAAAGCGAGAAACTAAGGATGAAGAAACTAGAGGAATT GAGCAGGAATATTGAAGCTCTGCCCTGA
AA sequence Show only first row Show all	>Potri.009G147500.5 pacid=42772051 polypeptide=Potri.009G147500.5.p locus=Potri.009G147500 ID=Potri.009G147500.5.v4.1 annot-version=v4.1 MTTQKPILEQQMSQMQIKLKSSGIISNYNESSLLRDEKDEEMSRSALAMFRAKEEEIEKKKMEVRDKVHAHLGRVEEATKRLAEIREELEALTDPMRKEV SMVRKRIDTVNRELKPLGLSCQKKEREYKEALEAFNDKNKEKAQLVSKLVELVGESEKLRMKKLEELSRNIEALP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27740			Family of unknown function (DU...		Potri.009G147500 [exp]	0	1
AT2G27310			F-box family protein (.1)		Potri.004G199300 [exp]	2.00	0.8838
AT1G75590			SAUR-like auxin-responsive pro...		Potri.002G024500 [exp]	4.24	0.8859
AT5G13090			unknown protein		Potri.001G059400 [exp]	5.65	0.8712
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	6.32	0.8913
AT5G23750			Remorin family protein (.1.2)		Potri.001G107000 [exp]	6.63	0.8864
AT4G33640			unknown protein		Potri.007G116400 [exp]	7.07	0.8681
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	7.34	0.8784
AT1G18190		GC2	golgin candidate 2 (.1)		Potri.015G039800 [exp]	12.00	0.8532
AT5G42350			Galactose oxidase/kelch repeat...		Potri.002G007700 [exp]	13.07	0.8693
AT5G17910			unknown protein		Potri.013G068800 [exp]	14.28	0.8538

Compare expression of checked genes

Potri.009G147500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.