Plant FIBer expression Database

Potri.009G147800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40270 685 / 0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
AT5G40290 635 / 0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G190200
[exp]
626 / 0 AT5G40270 615 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Potri.009G147750
[exp]
70 / 2e-14 AT5G40270 60 / 3e-11 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022228
[exp]
631 / 0 AT5G40270 665 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Lus10029160
[exp]
551 / 0 AT5G40270 623 / 0.0 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
Lus10013004
[exp]
401 / 3e-136 AT5G40270 469 / 8e-163 HD domain-containing metal-dependent phosphohydrolase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0237 HD_PDEase PF01966 HD HD domain
Representative CDS sequence
>Potri.009G147800.3 pacid=42772587 polypeptide=Potri.009G147800.3.p locus=Potri.009G147800 ID=Potri.009G147800.3.v4.1 annot-version=v4.1
ATGGGGGCTTATAGCAACGAAGAACTCCCACTGCCTCCAGTTTCCGATTTTTCAAATACCCGACTATCCAAACACGTTCACGATAATGTCCACGGCAACA
TTTACCTCGATCCGCTCTCTTTAAAGTTCATTGATACAGAGCAGTTTCAAAGGCTGCGGGACCTGAAACAACTTGGTGCTGCGCATATGGTTTATCCTGG
GGCTGTGCATACCAGGTTCGAACATTCTCTCGGCGTGTATTGGCTTGCTGGTGAAGCTGTTCAAATGCTCAAAAAGTACCAGGGTCTGGAGCTAGGTATT
GATAATTTTGATATTCAGACGGTGAAACTTGCAGGACTTCTACATGATGTGGGTCACGGTCCCTTCAGTCACTTGTTTCAATCCGAGTTTCTCCCTCTGG
TTATGAATGGCACGGAATGGTCGCATGAGCAAATGTCAACAAAAATGGTTGATCATATTGTTGATAAGCACCATATAGACGTTGACTCTGAAATGATGAG
AAAAGTTAAGGAGATGATACTAGCTAGCTCAGGATCAGCACCAAAAAATGATGCAGGTGAGAAGCGCTTTTTGTATGATATTGTTGCGAATGGTCGAAAT
GGAGTTGATGTGGACAAGTTTGATTATATTGTCCGTGACAGCCGAGCCTGCGGTCTGGGATGCAGTTTTGAGTTTCAGAGGTTGATGCAGACAATGCGAG
TTATGGGTGATGAGATTTGTTATCGCGCCAAGGAGTATCTCACTGTCCATAAGTTGTTTGCTACTCGCGCGGATCTTTACCGTACAGTTTATGTTCACCC
AAAAGTAAAGGCTATAGAGCTGATGATTGTAGATGCCTTGGTGGAAGCAAATGATTATCTGCAAATTTCATCTTTCATTGAAGATCCTTCAGAATACTGG
AAGTTAGATGATTCAATAATCAAAACTATTGAGACAGCTCCTAACCAAGAACTAAGGGAATCCAGGAATTTGATCCGACGCATACGCACGAGAAATCTTT
ACCAGTTTTGCAATGAGTATGCTGTTCCAAGGGACAAGATAGAAAATTTCAAAGACGTCACTGCACAGGATATTGTTTGTTCCCAGAAAAATGGCGGGGT
GCTACTGAAGGAGGAGGATGTTGCTGTAAGCAATGTGAGGATTGATTTGACTCGTGGAAGGCATAATCCTCTTGAAAGAATCAGTTTTTTCAAGGATTAT
GAGAGTGAAGAAAAATTTTCCATACCAGATGATCGCATCAGTCACCTGCTGCCTACATGCTTTCAAGATATGATAGTCAGGGTCTACGCCAAAAAGCCTG
AACTGGTAGGAGCAATCTCTGAGGCTTTTGAAAACTTCCAGCTAAACAAGTATGGGATTAAGGCGCAAGTACATGCAACTCCAGAGAAGAAGAAACGACG
AATGTAA
AA sequence
>Potri.009G147800.3 pacid=42772587 polypeptide=Potri.009G147800.3.p locus=Potri.009G147800 ID=Potri.009G147800.3.v4.1 annot-version=v4.1
MGAYSNEELPLPPVSDFSNTRLSKHVHDNVHGNIYLDPLSLKFIDTEQFQRLRDLKQLGAAHMVYPGAVHTRFEHSLGVYWLAGEAVQMLKKYQGLELGI
DNFDIQTVKLAGLLHDVGHGPFSHLFQSEFLPLVMNGTEWSHEQMSTKMVDHIVDKHHIDVDSEMMRKVKEMILASSGSAPKNDAGEKRFLYDIVANGRN
GVDVDKFDYIVRDSRACGLGCSFEFQRLMQTMRVMGDEICYRAKEYLTVHKLFATRADLYRTVYVHPKVKAIELMIVDALVEANDYLQISSFIEDPSEYW
KLDDSIIKTIETAPNQELRESRNLIRRIRTRNLYQFCNEYAVPRDKIENFKDVTAQDIVCSQKNGGVLLKEEDVAVSNVRIDLTRGRHNPLERISFFKDY
ESEEKFSIPDDRISHLLPTCFQDMIVRVYAKKPELVGAISEAFENFQLNKYGIKAQVHATPEKKKRRM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G40270 HD domain-containing metal-dep... Potri.009G147800
[exp]
0 1
AT1G73360 HD ATHDG11, HDG11,... ENHANCED DROUGHT TOLERANCE 1, ... Potri.004G074800
[exp]
1.41 0.9489
Potri.007G010000
[exp]
3.46 0.9481
Potri.015G036450
[exp]
3.74 0.9409
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Potri.015G028101
[exp]
4.58 0.9243
Potri.004G188432
[exp]
5.74 0.9298
AT4G02550 unknown protein Potri.011G163248
[exp]
6.00 0.9338
AT5G20930 TSL TOUSLED, Protein kinase superf... Potri.004G193300
[exp]
7.07 0.9205
AT3G17380 TRAF-like family protein (.1) Potri.017G049100
[exp]
7.14 0.9274
AT5G44010 unknown protein Potri.014G192200
[exp]
7.74 0.9252
AT3G27930 unknown protein Potri.001G348700
[exp]
11.09 0.9087

Potri.009G147800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.