Plant FIBer expression Database

Potri.009G148500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44860 249 / 7e-86 Ribosomal protein L24e family protein (.1.2)
AT3G53020 78 / 2e-18 RPL24B, STV1 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
AT2G36620 77 / 4e-18 RPL24A ribosomal protein L24 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G187800
[exp]
342 / 1e-122 AT2G44860 249 / 8e-86 Ribosomal protein L24e family protein (.1.2)
Potri.004G085300
[exp]
78 / 1e-18 AT3G53020 199 / 2e-66 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
Potri.012G139500
[exp]
77 / 4e-18 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
Potri.012G139400
[exp]
77 / 4e-18 AT3G53020 227 / 3e-77 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
Potri.015G141900
[exp]
77 / 5e-18 AT3G53020 196 / 3e-65 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
Potri.003G123101
[exp]
76 / 9e-18 AT3G53020 218 / 8e-74 SHORT VALVE1, Ribosomal protein L24e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020552
[exp]
246 / 1e-84 AT2G44860 240 / 2e-82 Ribosomal protein L24e family protein (.1.2)
Lus10009403
[exp]
119 / 5e-33 AT2G44860 120 / 2e-33 Ribosomal protein L24e family protein (.1.2)
Lus10008640
[exp]
77 / 3e-18 AT2G36620 243 / 1e-83 ribosomal protein L24 (.1)
Lus10035584
[exp]
77 / 3e-18 AT2G36620 241 / 5e-83 ribosomal protein L24 (.1)
Lus10024560
[exp]
74 / 9e-17 AT2G36620 238 / 2e-81 ribosomal protein L24 (.1)
Lus10032198
[exp]
74 / 1e-16 AT2G36620 240 / 1e-82 ribosomal protein L24 (.1)
Lus10006314
[exp]
72 / 2e-15 AT2G36620 233 / 2e-78 ribosomal protein L24 (.1)
Lus10029583
[exp]
71 / 2e-15 AT2G36620 232 / 4e-78 ribosomal protein L24 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0175 TRASH PF01246 Ribosomal_L24e Ribosomal protein L24e
Representative CDS sequence
>Potri.009G148500.2 pacid=42770822 polypeptide=Potri.009G148500.2.p locus=Potri.009G148500 ID=Potri.009G148500.2.v4.1 annot-version=v4.1
ATGAGGTTGGAGAAGTGTTGGTTCTGCTCCTCCACGGTATACCCAGGACACGGTATCCAGTTTGTCCGCAATGATGCTAAGATTTTTCGATTTTGCAGAT
CCAAGTGCCACAAGAACTTCAAAATGAAGAGGAACCCTCGCAAAGTAAAATGGACCAAGGCCTATAGAAGATTGCATGGAAAGGACATGACCCAGGATTC
GACCTTCGAGTTTGAGAGAAAGCGAAATAGGCCTGAGAGATATGACCGGAATCTTGCTGAGAATACTCTGAAGGCCATTAAGAAAATTGATAAGGTCAGA
TCTGACCGGGCAGCAAACCACATAGAGAAGAGGTTGAAGGTCAGGAAAGGCAAGGAGCGGAGGGAGGCACAAAAAGAATTGGAGCAGTCTATTCACCTGG
TCAAGGCTCCTCAAGTGCTTCGACAAGATCAATCTCTCACGTTACCCAAGATCAAAGTCCAGGTTTCCCAACCAAAAAGCGAGCAAAATCAGGCAATGGA
AGAGTGA
AA sequence
>Potri.009G148500.2 pacid=42770822 polypeptide=Potri.009G148500.2.p locus=Potri.009G148500 ID=Potri.009G148500.2.v4.1 annot-version=v4.1
MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKVR
SDRAANHIEKRLKVRKGKERREAQKELEQSIHLVKAPQVLRQDQSLTLPKIKVQVSQPKSEQNQAMEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44860 Ribosomal protein L24e family ... Potri.009G148500
[exp]
0 1
AT2G44120 Ribosomal protein L30/L7 famil... Potri.006G073200
[exp]
5.19 0.8570
AT3G03920 H/ACA ribonucleoprotein comple... Potri.019G034900
[exp]
6.32 0.8335
AT3G62840 Small nuclear ribonucleoprotei... Potri.014G129100
[exp]
7.48 0.8365
AT5G61170 Ribosomal protein S19e family ... Potri.015G056100
[exp]
8.94 0.8336
AT2G20060 Ribosomal protein L4/L1 family... Potri.004G004800
[exp]
9.21 0.7973
AT4G36420 Ribosomal protein L12 family p... Potri.007G019100
[exp]
13.85 0.7738
AT3G10110 MEE67 maternal effect embryo arrest ... Potri.009G076400
[exp]
14.45 0.8159
AT4G12600 Ribosomal protein L7Ae/L30e/S1... Potri.013G116800
[exp]
16.52 0.8349
AT5G62050 ATOXA1, OXA1AT,... HOMOLOG OF YEAST OXIDASE ASSEM... Potri.001G091800
[exp]
19.33 0.7865 OXA1.2
AT5G27395 Mitochondrial inner membrane t... Potri.013G026700
[exp]
19.79 0.8081

Potri.009G148500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.