Plant FIBer expression Database

Potri.009G148700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G033300
[exp]
56 / 2e-09 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.009G148700.1 pacid=42771316 polypeptide=Potri.009G148700.1.p locus=Potri.009G148700 ID=Potri.009G148700.1.v4.1 annot-version=v4.1
ATGACGAGGCCTCAAAGTAAAGACAAAAATAAAATGGTCAGTCTTGGTCCGGTCACCTCTCAAATGGGAAAAGCCCCAGAGGCTAAAGAAGCTGCAAATG
CTTCCTCAAGTATTAGACAGATCAAAGATCAGCCCAGAGAAGATCAGCCCATTTCTGACTTCAAAACAGTAAATACCGTTCGGCCCACACCTACTGCAAC
CCAATCAAATTACCCTATTCTACAGGCCCATAACCCACATGACCAAAGAACCAACGGACACCGGTTGAATGCTACCGGAAAAATCGGAGACCAATTCATC
GATCAACCGGTTCAAGAATCAGGCATGGATGAAGGGGAATCTCCTCTCCAGTTAAGACAAGAGAAAGTTCTTAACAATAGAGAAGAGAAAGAATCAACAG
CTTATCTCAAAAGAGAAAGATTCTTGTTAACCCCTAAAAACCTCAAGCGATGGAAGGTTTCGAAGAACTCTATTGTATCTGCTTCTCAGAAAGAGATTCT
TGACAATCTCTGGAATCACTCAAGAGCAGGAACAATGGCACCTTTTCCTCTAAGGCAGGTTGAGAGGGAGTTTACTCGTCTTAACAAAGGCAGGTCCATA
GTTGGCCAGATAGCTAACAAAGCCAGGCAAGAAGAAGACTGGTGTTCCTACCAGCCGCTCTGTCCCTGGATCGAAGCAGATATAAGTGCCTACGATGAAA
ACGCTCAACTGCCTCAAACAACCTACCATGATCTAATCTTTAGAACATATTTTAGAGATTATGATTTATGGCTCATATCATACTGCCACCTCCAAGAAGG
AAATGTGAAGGCGTACCTTTCCTTATTTGGAAATGAAGCAGCAGCTGAGGAAAGCAAGATTAAGTTCATTCGGCAAAAGCGAAGGGATAACAAAATAATG
ATTCTTGGAGTCATTAATCCTGATATACTTAATTTCTCACTGAACATGGGGCATGTCAAGTATCTGAAAATAGAATCAGAGAACCAGTTCTGCAATTCTC
CTCCAATGTTCAGGAAATTTGCAAGGTTCCTCATCCAGCAAAGTAATGGAGACTCAGCCAGGATATGGGTCAAAATTATTTCTGCAAGTCCTCTCCATAA
CAACAAGGAATGGAGAAACATTGCTGATATGAGAGCAAGGAAACCAGAATTTTTCCCCTCCATTCAAGTAATCAGAGAAAAGGTTCCAGACAAGTCACAA
CACTGGATTTCCAAGGAAGACACCAGTCATGGAGGCCTAAATCCTAAAATAGTAAGCCAATCCAATATTCGTATGGAAGGCTTAGACAGGATTCAGCAAG
CATTGTCAGATTATTCCTATCACTACATCTGGAGAGATTGTGGGAGGTTTATCTTCCAAGCCTTGCAAGGAAACAACTTGCAAAATAGTATCTCAGATGC
TATTATTGCAGGAGAATTAATGCCAGTGAAGTATTCCACTCAAATGGAATCCAAGGCAGTCCAAGAAGAAAAGGACAACGCATGA
AA sequence
>Potri.009G148700.1 pacid=42771316 polypeptide=Potri.009G148700.1.p locus=Potri.009G148700 ID=Potri.009G148700.1.v4.1 annot-version=v4.1
MTRPQSKDKNKMVSLGPVTSQMGKAPEAKEAANASSSIRQIKDQPREDQPISDFKTVNTVRPTPTATQSNYPILQAHNPHDQRTNGHRLNATGKIGDQFI
DQPVQESGMDEGESPLQLRQEKVLNNREEKESTAYLKRERFLLTPKNLKRWKVSKNSIVSASQKEILDNLWNHSRAGTMAPFPLRQVEREFTRLNKGRSI
VGQIANKARQEEDWCSYQPLCPWIEADISAYDENAQLPQTTYHDLIFRTYFRDYDLWLISYCHLQEGNVKAYLSLFGNEAAAEESKIKFIRQKRRDNKIM
ILGVINPDILNFSLNMGHVKYLKIESENQFCNSPPMFRKFARFLIQQSNGDSARIWVKIISASPLHNNKEWRNIADMRARKPEFFPSIQVIREKVPDKSQ
HWISKEDTSHGGLNPKIVSQSNIRMEGLDRIQQALSDYSYHYIWRDCGRFIFQALQGNNLQNSISDAIIAGELMPVKYSTQMESKAVQEEKDNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.009G148700
[exp]
0 1
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.002G182000
[exp]
1.41 0.9412
Potri.010G200150
[exp]
1.41 0.9210
AT1G64295 F-box associated ubiquitinatio... Potri.010G224400
[exp]
2.00 0.9079
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.002G182300
[exp]
2.44 0.9099
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.010G060900
[exp]
4.47 0.8735
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.002G154200
[exp]
4.89 0.8710 NAC087
AT1G33060 NAC ANAC014 NAC 014 (.1.2) Potri.002G154000
[exp]
6.92 0.8531 NAC101
AT4G31020 alpha/beta-Hydrolases superfam... Potri.018G111400
[exp]
8.71 0.8409
AT5G19875 unknown protein Potri.003G216100
[exp]
11.35 0.7864
AT5G17260 NAC ANAC086 NAC domain containing protein ... Potri.014G108100
[exp]
12.80 0.7874 NAC097

Potri.009G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.