Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08250 606 / 0 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT3G44720 592 / 0 ADT4 arogenate dehydratase 4 (.1) AT2G27820 580 / 0 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT5G22630 577 / 0 ADT5 arogenate dehydratase 5 (.1) AT1G11790 396 / 4e-136 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT3G07630 396 / 4e-136 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188100 [exp] 827 / 0 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.011G004700 [exp] 431 / 1e-149 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 412 / 4e-142 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.008G195500 [exp] 411 / 7e-142 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043369 [exp] 674 / 0 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10019526 [exp] 674 / 0 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10020549 [exp] 660 / 0 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 660 / 0 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10015130 [exp] 407 / 2e-140 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10031547 [exp] 405 / 1e-139 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10018128 [exp] 386 / 2e-131 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10036135 [exp] 377 / 2e-128 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10015561 [exp] 350 / 3e-118 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 339 / 1e-113 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [poplar] [flax] PBP PF00800 [poplar] [flax] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Potri.009G148800.1 pacid=42771237 polypeptide=Potri.009G148800.1.p locus=Potri.009G148800 ID=Potri.009G148800.1.v4.1 annot-version=v4.1 ATGCAATCGCTTTCTACTCCGTCTCCGATCAAGTCCTTGATCCGGCCACGTCCTCGAGTCACCCGAGCGAGTCCCAACAAACTCGTTCTCCAATGCATCT ACCGTTCCGACTCGGTTTCTTTCCCGAACGGTGTCGGTTCGAACCGAGCCGATTGGCAAAGTTCTTGTGCTATATTGGCAAGCAAAGTGGTAGCTCAACA ACAGCCAATAGATAAATCTATTAGTGCTGGCGATTCTGGCGGAGTAGCAGATCATGTGGCCGCTGTTAACGGCCACAAGACATCCGTGGACTTAAATCTA GTCCCGATAGAAAAAGCCACATCGAACTCGAACAACAGCAGCATTAAACCTCATCAGCCACAAAAAGCGTTAACGATAAGTGACTTATGTCCTGCCCCTA TGCACGGGTCACAACTCCGAGTCGCGTATCAAGGAGTTCCCGGCGCGTACTCTGAAGCTGCTGCTGGAAAAGCCTATCCCAACTGTGAAGCGATTCCTTG TGACCAGTTTGAGGTTGCTTTTCAAGCTGTTGAGCTTTGGATTGCCGATCGCGCTGTTTTACCTGTCGAGAATTCTCTCGGTGGATCCATTCATCGGAAT TATGACCTCCTCCTCCGTCACCGCCTCCATATCGTTGGTGAAGTTCAGTTACCGGTCCACCACTGCCTTCTTGCCCTTCCTGGAGTCCGGAAGGAGTATG TTAACCGAGTTATTTCGCACCCACAAGCTCTCGCTCAATGCGAATTAACTCTCACCAAACTCGGTCTCCAGGCGGTGCGTGAAGCAGTAGACGACACAGC TGGTGCTGCAGAGTATATCGCGGCCAACAACCTCCGTGACACAGCTGCGATTGCGAGTGCACGCGCGGCAGAGCTTTATGGGATGCAGGTACTTGCTGAT GGGATCCAGGATGATTCAAGCAATGTCACGCGCTTTGTGATGTTGGCGCGTGAACCGATTATACCGAGAACGGACAGGCCATTCAGGACAAGTATTGTGT TTGCTCATGATAAAGGAACGAGTGTGCTGTTTAAGGTGCTTTCAGCCTTTGCGTTTAGGAATATAAGTTTGACGAAGATTGAATCAAGGCCGCACAGGAA CCGTCCGATTAGGCTGGTTGATGATGCAAATGTGGGGACAGCAAAGCATTTCGAGTACATGTTTTATGTTGATTTTGAAGCCTCGATGGCTGAGGTTAGA GCTCAGAATGCATTGGCTGAAGTTCAAGAATTCACATCTTTCCTGAGGGTGTTAGGGAGCTATCCAATGGACATGACACCGTGGTGTCCATCAAGAGAAG ACGACAATGACGATGGTGGTAACGAGAAAAACCCATTTTAA
AA sequence Show only first row Show all	>Potri.009G148800.1 pacid=42771237 polypeptide=Potri.009G148800.1.p locus=Potri.009G148800 ID=Potri.009G148800.1.v4.1 annot-version=v4.1 MQSLSTPSPIKSLIRPRPRVTRASPNKLVLQCIYRSDSVSFPNGVGSNRADWQSSCAILASKVVAQQQPIDKSISAGDSGGVADHVAAVNGHKTSVDLNL VPIEKATSNSNNSSIKPHQPQKALTISDLCPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRN YDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYVNRVISHPQALAQCELTLTKLGLQAVREAVDDTAGAAEYIAANNLRDTAAIASARAAELYGMQVLAD GIQDDSSNVTRFVMLAREPIIPRTDRPFRTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYVDFEASMAEVR AQNALAEVQEFTSFLRVLGSYPMDMTPWCPSREDDNDDGGNEKNPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.009G148800 [exp]	0	1
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096100 [exp]	1.00	0.8008
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.001G177400 [exp]	1.41	0.7956	IAA8.3
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.004G188100 [exp]	2.00	0.7678
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	3.87	0.7921
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	6.00	0.7528	RGA.58
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.016G091100 [exp]	6.92	0.7422	PAL1.3,PAL4
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	12.40	0.7628
					Potri.015G010500 [exp]	13.41	0.6492
AT5G20480		EFR	EF-TU receptor (.1)		Potri.005G031700 [exp]	14.89	0.6977
AT1G52330			Late embryogenesis abundant (L...		Potri.003G055000 [exp]	16.24	0.7451

Compare expression of checked genes

Potri.009G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.