Plant FIBer expression Database

Potri.009G149100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22640 751 / 0 EMB1211 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G188432
[exp]
154 / 2e-43 ND /
Potri.019G015768
[exp]
45 / 0.0002 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009392
[exp]
657 / 0 AT5G22640 765 / 0.0 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2)
Lus10020545
[exp]
620 / 0 AT5G22640 743 / 0.0 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2)
Lus10034504
[exp]
69 / 4e-14 AT5G22640 99 / 6e-26 embryo defective 1211, MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.1), MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0251 MORN PF02493 MORN MORN repeat
Representative CDS sequence
>Potri.009G149100.1 pacid=42772110 polypeptide=Potri.009G149100.1.p locus=Potri.009G149100 ID=Potri.009G149100.1.v4.1 annot-version=v4.1
ATGGCCGGCGATAACTCAGCAGACCAAACCACCGACTCACCCGACCCGAACCCACAAGAAGACCCAAATGCTGATACCAACAAAGACAACAACCTCTCTT
TTTCCTCGTACTCCGACTCCGACTCCGACTATGACTACGACTACGACTACGACTACACTCAATCCTCCACCAACCAAGAGGACGGCGTTGTCACCTACAC
CAGACCGGGAGATGAAATCCCAGAATCGGAAAACACACCGGAGAAAAACATTGCGCGGTTCGCGGATGTCTTGGAGAGCAAAAGGATGAAGAGGATGAAA
GAAGAAGAAGACAGAAACTATGTTTTTTACGAGGATTTGTTTGATTTTCCAAGGGACAAAGAGAATTGGAGGGAAGAGGATTTGAAGGAGCTGTGGGCTG
ACCCTCCATGGGAATCTACGAAACCAGGGTGGGACCCAGTGTGGGCAGATGAGGAGGATTGGGATATTGTTAGGAAGATGAAAGAAGAAGGGAGAGACCC
GCCTATTGCACCTTTTTACGTGCCTTATAGGAGGCCTTATCCGGTGATTCCTGATAATCATTATGATATCTCGAATCCGAAAGCTGTTATTGAAGAACTG
GATAGGATTGAGGAGTTCTTGACTTGGGTTAGCTACATTTTCGAAGATGGTAGCTCGTATGAAGGCACTGTTTGGGATGACTTGGCACATGGCAAGGGTG
TTTATGTTGCTGAACAGGGGCTAGTCAGGTATGAAGGTGAGTGGCTCCGGAACAACATGGAAGGGCACGGAGTGGTAGAAGTTGATATACCTGATATAGA
ACCTATACCAGGTTCCAAGCTTGAAGAAAAGATGCGTGCTGAGGGAAGAATTATATCTAGAGATTTTATGTCCCCGGAGGACAGGAAATGGCTGGAGATG
GATATTGAAGATAGCATGCGTCTGGCTGGAGGGCAGTATGAAATACCTTTTTACGAGAATGATGAGTGGATTAGACAATTTGGGGAAAAACCGGAGAAAG
GTCGGTACCGTTATGCTGGTGAATGGAAGCATGGCAGGATGCATGGTTGCGGTGTCTATGAAGTCAACGAGCGCACCATATTTGGTAGGTTCTACTTTGG
AGAGTTCGTAGAGGATGCTACTGATTGTGATGAAGACATTTCTGCGGTGCACGCAGGAATAGCTGAAGTAGCTGCTGCAAAGGCTAGGATGTTTGTCAAT
AAACCAGATGGAATGGTTAGGGAAGCGTTTGGTCCGTATAGTGATCCTCAACATCCCTATTTCTATGAGGAAGAAGATGTGTGGATGGCGCCAGGCTTCA
TCAACCAGTTCTACGAAGTACCTGATTATTGGAAAAGATATGCACATGAAGTAGATCAAGAAAGAGAGATGTGGTTAAATTCCTTTTATAAAGCTCCACT
GAGATTGCCTATGCCTGCTGAGCTTTCATACTGGTGGGAGAATGAGGAGACTCCTGAATTCATTGTTCTTGACAAGGAACCAGAACCTGATCCTGAAGAT
CCATCTAGGCGCATATATACTGAAGATCCTGTCATCTTACACACACCAACTGGACGAATAATTGATTGGGTTGAGGATGAGGAACATGGGGTTCGGTTAT
TTTGGCAGCCACCTCTGAAAGATGGGGAAGATTTTGATCCTGATAAAGTTCAATTCCTACCCCTTGGTTTTGATGAGTTTTATGGAAAAGAGGAGGTGAT
GAAGAAGGAAAACATATGGCAGCGACTTCTAAAAAGAGCTGATGATGTGGGCAAGCTGGTGCGTGGTAAACTAGAGAAATGGACTGAAGAGAAGAAGAAA
GCTAGCGAGATAAAAATACAGCTGTATGAAAAGGAACTTGAGTTGATAGAGGCTGAATTGTGTTTAGAGGAGACCATGGAAGACTTGGACGAGGAGCTGA
AGATGAGAGAAAAAGAGGAGGAAGAGAAGGTTGAGATTGGTTTGCAGGGGGAAGAAAATACCTTTGTGTCAGCCCAACAGGAGGAGAAACCTCTCGCTAA
AGATGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGATGATGTTACACCATCAAGTTTTGGTTCTGTGACCCAAGATGAGGACCCAAGA
AAGAATGACCAGAAAGGAAACAGACCTGCAGGAGCTCCATTTTCTGCATCATCACTGTCATTTGCTTCCTGTAGTCTTCTTTCAACAGTTCCCTCTAGGC
TACAGCAATCGTTTTTAACATGGAAGAAAAGATTGCCGCAGAATGCAACTCCTTCCCTTTGTGTGGAGAGCCCTAATGACCTCTCTGGAATGGTTAATTC
AGTCAGTTTCCCCCCAGTCCTTGGTCAAAAGGGAAGGTTGAGAGCTGAAAGTTGTGCAGATCAGAGGATTCAAGCTACAAGCCATTCCATCGGAAAGATG
TCTCGGTTACATTCCTTATCACGAATTCTATCCCATCCTTCAGCTTCTGTGAACCCCAGAGAAAATCTAAAAAAGCCAAGAAAACAGAGGCATCCTTGGT
TGCATGCAGCACCAGAGAGAGATTCAGACAGCATATTGTCATTGCACACACAATTGTATTATTTAGAATCATATACTAATACAATTAAATATGAGCCTCT
TCCTCTCTTAAATTAG
AA sequence
>Potri.009G149100.1 pacid=42772110 polypeptide=Potri.009G149100.1.p locus=Potri.009G149100 ID=Potri.009G149100.1.v4.1 annot-version=v4.1
MAGDNSADQTTDSPDPNPQEDPNADTNKDNNLSFSSYSDSDSDYDYDYDYDYTQSSTNQEDGVVTYTRPGDEIPESENTPEKNIARFADVLESKRMKRMK
EEEDRNYVFYEDLFDFPRDKENWREEDLKELWADPPWESTKPGWDPVWADEEDWDIVRKMKEEGRDPPIAPFYVPYRRPYPVIPDNHYDISNPKAVIEEL
DRIEEFLTWVSYIFEDGSSYEGTVWDDLAHGKGVYVAEQGLVRYEGEWLRNNMEGHGVVEVDIPDIEPIPGSKLEEKMRAEGRIISRDFMSPEDRKWLEM
DIEDSMRLAGGQYEIPFYENDEWIRQFGEKPEKGRYRYAGEWKHGRMHGCGVYEVNERTIFGRFYFGEFVEDATDCDEDISAVHAGIAEVAAAKARMFVN
KPDGMVREAFGPYSDPQHPYFYEEEDVWMAPGFINQFYEVPDYWKRYAHEVDQEREMWLNSFYKAPLRLPMPAELSYWWENEETPEFIVLDKEPEPDPED
PSRRIYTEDPVILHTPTGRIIDWVEDEEHGVRLFWQPPLKDGEDFDPDKVQFLPLGFDEFYGKEEVMKKENIWQRLLKRADDVGKLVRGKLEKWTEEKKK
ASEIKIQLYEKELELIEAELCLEETMEDLDEELKMREKEEEEKVEIGLQGEENTFVSAQQEEKPLAKDEEEEEEEEEEEEEEDDVTPSSFGSVTQDEDPR
KNDQKGNRPAGAPFSASSLSFASCSLLSTVPSRLQQSFLTWKKRLPQNATPSLCVESPNDLSGMVNSVSFPPVLGQKGRLRAESCADQRIQATSHSIGKM
SRLHSLSRILSHPSASVNPRENLKKPRKQRHPWLHAAPERDSDSILSLHTQLYYLESYTNTIKYEPLPLLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22640 EMB1211 embryo defective 1211, MORN (M... Potri.009G149100
[exp]
0 1
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G154300
[exp]
1.41 0.9273
AT5G62620 Galactosyltransferase family p... Potri.012G072400
[exp]
1.73 0.9198
AT1G06950 ATTIC110, TIC11... ARABIDOPSIS THALIANA TRANSLOCO... Potri.019G127000
[exp]
5.00 0.9283
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.017G124500
[exp]
5.83 0.8998
AT4G09730 RH39 RH39 (.1) Potri.005G198300
[exp]
7.48 0.9119
AT1G48650 DEA(D/H)-box RNA helicase fami... Potri.015G042500
[exp]
9.48 0.9114
AT4G31210 DNA topoisomerase, type IA, co... Potri.006G279700
[exp]
9.59 0.8965
AT1G75010 ARC3 ACCUMULATION AND REPLICATION O... Potri.010G099300
[exp]
12.28 0.8455
AT2G47940 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP pr... Potri.014G135200
[exp]
16.09 0.8881 Pt-DEGP2.2
AT4G33760 tRNA synthetase class II (D, K... Potri.001G289001
[exp]
16.73 0.8981

Potri.009G149100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.