Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60250 378 / 6e-124 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G25370 293 / 7e-92 RING/U-box superfamily protein (.1.2) AT5G37560 283 / 4e-90 RING/U-box superfamily protein (.1) AT3G45580 276 / 7e-88 RING/U-box protein with C6HC-type zinc finger (.1) AT2G25360 265 / 5e-84 RING/U-box superfamily protein (.1) AT2G21420 258 / 6e-80 IBR domain containing protein (.1) AT2G19610 256 / 6e-80 RING/U-box superfamily protein (.1.2) AT2G26130 248 / 3e-77 RING/U-box protein with C6HC-type zinc finger (.1) AT5G07640 238 / 3e-74 RING/U-box superfamily protein (.1) AT2G26135 239 / 6e-74 RING/U-box protein with C6HC-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104700 [exp] 508 / 1e-175 AT5G60250 424 / 4e-141 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G119000 [exp] 175 / 3e-48 AT4G19670 622 / 0.0 RING/U-box superfamily protein (.1.2) Potri.015G117600 [exp] 171 / 1e-46 AT4G19670 661 / 0.0 RING/U-box superfamily protein (.1.2) Potri.003G187700 [exp] 143 / 2e-38 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.001G037200 [exp] 133 / 8e-35 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.018G064400 [exp] 129 / 1e-32 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.013G120300 [exp] 85 / 4e-18 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1) Potri.006G123500 [exp] 84 / 5e-18 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.019G093600 [exp] 83 / 8e-18 AT3G53690 158 / 7e-47 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036127 [exp] 564 / 0 AT5G60250 338 / 9e-108 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10036128 [exp] 453 / 9e-155 AT5G60250 410 / 1e-136 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038341 [exp] 186 / 5e-52 AT4G19670 607 / 0.0 RING/U-box superfamily protein (.1.2) Lus10036202 [exp] 178 / 3e-49 AT4G19670 624 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024093 [exp] 129 / 1e-33 AT3G14250 209 / 2e-66 RING/U-box superfamily protein (.1) Lus10026104 [exp] 125 / 1e-31 AT3G14250 240 / 1e-77 RING/U-box superfamily protein (.1) Lus10000412 [exp] 124 / 2e-31 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1) Lus10022063 [exp] 102 / 3e-24 AT3G53690 175 / 3e-53 RING/U-box superfamily protein (.1) Lus10018293 [exp] 75 / 3e-14 AT4G19670 285 / 9e-91 RING/U-box superfamily protein (.1.2) Lus10040616 [exp] 67 / 2e-11 AT4G19670 278 / 3e-88 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.009G150100.1 pacid=42771356 polypeptide=Potri.009G150100.1.p locus=Potri.009G150100 ID=Potri.009G150100.1.v4.1 annot-version=v4.1 ATGGAGATGGAGTCTGGAGTGCTGACGGAGCAACGCCGCGAAATCGAAGAGGCCAAAACCTTAAACTCTGATCTCGACTTGGCATTCAATCTCCAAATGC AAGAAGCGATGACAGCCTCCCTTTCCATCCTCAATCATCCTCCCTCAACGTTCTCGCCATCTTCCTCCTCCACTCCCAAAAACGAAGAAGCAAAAGCAGA AGCAGAAGATTTCGACTGCTGCTCGAATTTTTTCCTGGAGGATATCGAGAGGCTGGATCAAGAACGCAAGGACCGTGAAGAAAGTGAGAATCTAATGAGA GAAATGAGAGAAGATCTGGACCGTCGAATGCACGATCAAAAAGTCGCTAGCGAAATCATGAACATCCCTGACGAAGAATGGGAGGAATACGGAGATGATT ACGAAGACCCGTTCGAGAATGGAGAGAGGGTTAGTTTTTTCAAGGTGTATAGCAAGGGAGTGGAGAGTGAAGAGAGGATCAGGGATATGAAGGTAATTGT GGGTGGAATTGGAGTTGCCATTTGTGATTCTAAGGATAATTTGATCTTTGAAGTTAGCAAGGGTATAGATGTTGGTGCAGAAGGCAGTAGTAGTAATAAG AGTTGTGCAGGGGTTTCAGTGGAGCTCCAGGCTTTGATTGAAGGGTTAAATGCTGCTTTTGCTTTGGATTTGAAAAACCTCACCTTCTTTGTTGACCACT CTATGCTCTACCAATATGTTACTGGTGCTGTTCAACCACAAAATGGTAAGATTTCGACCTTGGTGAATCAGGTGTCTCTTCTTCAGAAAAAGTTTGCAGA TTGTAAGCCGTCCCTTGTAGCATGCTCTGATGTCAAGTTTGCATTTAGATTTGCAAAAGACGCCATAGTTTCTCAGATCACTTGGCCTGCAGAAAATAGC AAAGGCAAAAGGAAACTGAAAGAGACTTGTGTAATATGCTATGAAGATACAGATGTAGATCAGATATTCTCAGTTGATGGCTGTTTTCATAGATATTGCT TTCCCTGTATGAAACAGCATGTTGAAGTGAAGTTACTTCAAGGGACAATGGCTAAGTGTCCTCATGAAGGCTGTAAATCTGAAGTTAGTATTGAGACTTG TGGGGAATTCCTGGACCCAAAATTAGTTGAGATAATGAGCCAAAGGAAAAAGGAAGCTTCTATTGCTGTTACAGAGAAAGTTTACTGTCCATATCCAAGA TGCTCTGCATTAATGTCAAAAAGTGAGGTTTTGGAATATACAAATTCATCATTTGTTGGTGGTGAAAAATCTGGAGCCAGGAAATGTGTAAAATGTCATT TCTTTTTCTGCATCAACTGCAGAGTTCCATGGCACTACAATATGACCTGTTATGATTATAAAAGATCAAAACCTCATCCCCGCACGGAAGATAAGATGCT TGATAGTCTTGCAAAAAGAAAACTTTGGCGCCAATGTGTGATGTGCAAAAATATGGTGGAACTTGCTGAAGGCTGCTATCATATCACTTGCAGATGTGGA TACGAGTTCTGTTATACCTGTGGAGCTAAGTGGAAGAACAAGAAACCTACATGTAGCTGTCCGATCTGGGATGAGAGGAACATCATTCGCGATGGGAGAA GGCGATGA
AA sequence Show only first row Show all	>Potri.009G150100.1 pacid=42771356 polypeptide=Potri.009G150100.1.p locus=Potri.009G150100 ID=Potri.009G150100.1.v4.1 annot-version=v4.1 MEMESGVLTEQRREIEEAKTLNSDLDLAFNLQMQEAMTASLSILNHPPSTFSPSSSSTPKNEEAKAEAEDFDCCSNFFLEDIERLDQERKDREESENLMR EMREDLDRRMHDQKVASEIMNIPDEEWEEYGDDYEDPFENGERVSFFKVYSKGVESEERIRDMKVIVGGIGVAICDSKDNLIFEVSKGIDVGAEGSSSNK SCAGVSVELQALIEGLNAAFALDLKNLTFFVDHSMLYQYVTGAVQPQNGKISTLVNQVSLLQKKFADCKPSLVACSDVKFAFRFAKDAIVSQITWPAENS KGKRKLKETCVICYEDTDVDQIFSVDGCFHRYCFPCMKQHVEVKLLQGTMAKCPHEGCKSEVSIETCGEFLDPKLVEIMSQRKKEASIAVTEKVYCPYPR CSALMSKSEVLEYTNSSFVGGEKSGARKCVKCHFFFCINCRVPWHYNMTCYDYKRSKPHPRTEDKMLDSLAKRKLWRQCVMCKNMVELAEGCYHITCRCG YEFCYTCGAKWKNKKPTCSCPIWDERNIIRDGRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.009G150100 [exp]	0	1
					Potri.002G146750 [exp]	2.44	0.8757
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050240 [exp]	3.74	0.8749
AT3G19610			Plant protein of unknown funct...		Potri.001G294600 [exp]	3.87	0.8371
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.006G034500 [exp]	4.47	0.8321
AT4G10320			tRNA synthetase class I (I, L,...		Potri.007G126501 [exp]	6.92	0.8389
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	7.74	0.8536
AT1G69360			Plant protein of unknown funct...		Potri.017G088900 [exp]	7.87	0.7840
AT3G26000			Ribonuclease inhibitor (.1)		Potri.010G054600 [exp]	9.89	0.8238
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G061100 [exp]	10.90	0.8357
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	12.24	0.8207

Compare expression of checked genes

Potri.009G150100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.