Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22760 855 / 0 PHD finger family protein (.1) AT5G35210 820 / 0 metalloendopeptidases;zinc ion binding;DNA binding (.1.2) AT5G12400 252 / 2e-67 DNA binding;zinc ion binding;DNA binding (.1) AT5G44800 65 / 7e-10 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G14920 64 / 1e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 61 / 7e-09 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT3G14980 59 / 3e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 59 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G36740 59 / 3e-08 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT3G01460 53 / 3e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G189600 [exp] 2662 / 0 AT5G22760 879 / 0.0 PHD finger family protein (.1) Potri.009G049100 [exp] 495 / 1e-145 AT5G12400 1084 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.001G254300 [exp] 266 / 1e-71 AT5G12400 1020 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Potri.008G152600 [exp] 69 / 3e-11 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 67 / 9e-11 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 62 / 4e-09 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.009G072600 [exp] 58 / 6e-08 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.003G110100 [exp] 58 / 8e-08 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 56 / 3e-07 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020532 [exp] 1491 / 0 AT5G22760 731 / 0.0 PHD finger family protein (.1) Lus10009383 [exp] 1488 / 0 AT5G22760 714 / 0.0 PHD finger family protein (.1) Lus10027346 [exp] 220 / 2e-57 AT5G12400 1029 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10014918 [exp] 219 / 6e-57 AT5G12400 1062 / 0.0 DNA binding;zinc ion binding;DNA binding (.1) Lus10006110 [exp] 66 / 3e-10 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 65 / 6e-10 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10041322 [exp] 57 / 2e-07 AT1G08060 440 / 4e-125 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) Lus10037390 [exp] 56 / 3e-07 AT1G08060 455 / 7e-130 MORPHEUS MOLECULE 1, MORPHEUS MOLECULE, MAINTENANCE OF METHYLATION, ATP-dependent helicase family protein (.1.2) Lus10007741 [exp] 55 / 7e-07 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10036223 [exp] 54 / 1e-06 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.009G150200.1 pacid=42771252 polypeptide=Potri.009G150200.1.p locus=Potri.009G150200 ID=Potri.009G150200.1.v4.1 annot-version=v4.1 ATGGAGTTTACGGAGGTTAAAAAAAGGGGTAGAGGTAGACCGAAAAAGCGGAAGCTAAATGAGGAGGAGAGTGAAGATAAGAAATTAGTAGCTAGTGCTT TGAAAAAGCAAGCTTTGGGTTTTAGATGGAAGCCATTAGTGGGTAGGTATGTGTTGAAAGAATTTGGGAGTGAGATTTTTTTAGGGAAGATAGTGTATTA TGATACTGGGCTGTATAGGGTGGATTATGAAGACGGGGGCTGCGAGGATTTGAAGAGTGGTGAGTTTCGTAAGATAATATTAGGGGATGGTGATTTCGAT GATGAACTGGTTCTTAGAAGGGAAAAGTTAGATGAATTTGTTTTGCAAAAGAGTGAGAAGAGGAAGGTGGAAGCCGAGAAGGAAGTGGTGGATTCAAAAA ACGAGTTGGGTGGTGGGTTGACGGTTGAGAATGAAGGGGTGCATGATGAGGATTATGCGGATTCCTCGAGTGATTCATGTGAGCATGTGCGTGTTGGGGG TTTGGGAATGGAAGTGGAGACTCCAGTTGCTCCTCCACCGCAATTGCCTTCATCATCAGGGAGTATTCGTGTGCCGGACGAGTATGTCTCACATCTCTTT TCCGTGTACACATTTTTGAGGTCATTTAATATCCGTCTTTTCTTGAGCCCTTTTACATTGGATGATTTGGTGGGGGCGATTAATTGCTCAATCCAGAACA CTTTGTTGGATGCCATTCATTTTGCTTTGATGCGAGCACTGAGACGTCGTCTTGAAGCACTCTCTTCAGATGGTTCTGAGCTTGCATCAAAATGCTTGAG GAGCGTGGATTGGCGCTTGCTTGATTCACTCACTTGGCCTGTTCATTTGGTCCATTATTTTACAATAATGGGATATGCGAATGGAGCCGAGTGGAAAGGA CTTTATGATCATCTTTGGAAGAGGGAGTATTATTCCTTGCCAGTGGGTAGGAAGTTGATGATTCTGCAGATCCTATGCGATGATGCCTTGGATTCTGTGG AGCTAAGAGCAGAAGTTGATATCTGTGAAGAGTCAGAAGTTGGCTTAGATCCTGATGTTGTTACAGCCATTCTTCCTGATAATGGACCAACAAGGGTTCA TCCTAGATGTTCCAAGACTTCAGCTTGCAAGGACAGGGAGACCATGGATATCATTGCAGGAAGCCAGGGAAGCAAGCCTTTCAGTAATTCAAAGCATTTG GGCTCCAAAGGTACTGAAAGGGATGGGAATGCATCTGATGCTGACGTAGATGGGAATGGGGATGAATGCCGTCTTTGTGGCATGGATGGAATCTTGCTTT GTTGTGATGGATGCCCATCATCATATCATTCAAGATGCATAGGTGTCGTCAAAATGTATATACCTAAAGGCCCATGGTATTGTCCAGAGTGCACCATCAA CAAGTTGGGACCTACTATTTCAATGAGAACATCACATAGAGGAGCAGAAGTATTCGGAATTGATTTGTATGAGCAAGTCTTCATGGGTACTTGCAACCAC TTACTGGTGCTGAAAGCTTCTACTGGTGGAGAACCATGTTTCAGATACTACAATCTGATGGAAATCCCAAAGGTTCTGCAAACACTTTCTGAATCCATGC AACATAGATTATTATACTCAGAGATTTGCAAGGCAATTGTACAGCATTGGAACATACCACAAAGTGCATCCTCACTTTTGGAAAAGATGGAAAGAGGCTT CGATATAGCATCTGTGAAGGAAGATGCAATATTTTCTACTATATCTCTTCCTTTTTGTGAGGAAAGCCATGAAGTTCCAGAGAATGTTGTGGCTGAGAAT GCAGTTACTTTAAATGGAAGCAATACAGATATTGTAGCAGTTTCATGTCTTGATACCTCGCTTGATGCATCGTTTCAAGTTGGTCCTCAGTACATTGTGA GCGACGGTGAAATGTCGAGAACAGGAAATTGCCATCTTATGAGCATGAAGCCGCATGAGCAGATTAAACTGGAGTCTACTGAATCGGTTAACCAGCTTGC TGATCCATCTGGTGTAACCCAGCAAAGCCGGGTCGACAGGTCAAGTGCAAAAGAACTTACCACATGCACATCAGCAAACAGTGTAGGCAGTCGTATTGAG AATGAAATTGGAAATTGTTTACCAGCTTTTGTGTTTTCCCAAAGCAAGGAAGGCAATCATCCAGGCTTTGAAATGGTTGAGAGAAATTCAACAAATAGTT GTTCTTACATGGGAACTTTTTTCAAACCTCATGCCTACATAAATCACTATATGCACGGGGATTTTGCTGCCTCTGCTGCTGCTAATCTCAGTGTTCTTTC ATCTGAGGAAAGTCACTCAGAGACTCAGAAATCAGGCAATGGCAGGAAAGCTATTTCTGACATTTTATTGCAAGTAAAAGCTTTTTCAACAGCAGCCTCC CGTTTTTTCTGGCCAAGTTCTGAAAGAAAGCTTGTGGAGGTGCCAAGAGAGAGGTGTGGTTGGTGTCATTCTTGCAAGCAGCCCTCCAGCAACAGAAGGG GATGCGTGTTAAATTCTGCTGCCTTGACTGCTACTAAAGGTGTCTCGAAGATAATCAGTGGACTTCGCCCAGTTATGAATGGAGAGGGAAGTCTTTCTAG CATATCAATGTACATTTTATGCATGGGGGAGATTTTATGTGGTCTTACAGTCGGCCCCTTTCTGAGTGCAATTCACCGAAAACAGTGGTGTAAACAAGTA GAAGATGCTTCAAGTTATAGTGCAATAAAACAGCCCTTGCTTGAACTTGAGGAAAATATCCGCCTTATTGCTCTTTCTGGGGATTGGGTCAAGGCAATGG ACGATTGGTTGGTTGAATCTTCTGTGACCCATAGTTCTGCAAGTATTATTGGAACCGCACAAAGACGAGGAGTGAATGGGAAACGACATAGAAAACATTC TGGTGTGATTGACGTTGCAGCTGATGGTTGCCATGACAAAAGTTTTGTCTGGTGGCGAGGGGGAACTCTATTAAAGCTTGTATCCAACAAAGCAATTTTG CCTCAGTCAATGGTTAAAAGGGCAGCTAGGCAAGGTGGTTCTAGAAAGATTTCTGGTATCCATTACACTGATGATTTGGAGATTCTGAATAGAAGCAGAC AGTTGATTTGGAGAGCCGCAGTCGAAAGGAGTAAGAATGCATCACAGCTTGCACTTCAGGTTAGATACCTAGACTATCATGTGAGATGGAGTGATCTTGT TCGACCTGAGCAGAACCTCCAGGATGGAAAAGGTTCAGAAACTGAGGCATCGTTTTTTAGAAATGCAGTCATTTGTGATAAGAAATTTGAAGAAAAGACG ATACGATATGGAATTGCTTTTGGGAACCAAAAGCATCTTCCTTCCCGCATCATGAAGAATATAATTGAAATTGAGAAAACTGAAGATGGAAAGGATAAGT ACTGGTTTTCTGAATTGCACGTTCCTTTATATTTAATCAAAGAGTTTGAAGAAAGCGTAGATGTCATTCCACCATCATCTAATAAGCCTTCAAATGAGTT ATCTGTGTTGCAAAGAAGACAGTTGAGAGCTTCCCGCAGGGATATGTTTTCTTATCTTGCCTTTAAGAGAGATAAGTTGGACAAGTGCTCTTGTGCTTCA TGTCAATGTGATGTTTTGATTAGGAATACGGTCACATGCAGTTCTTGCCAAGGTTATTGTCACCAGGACTGTACTGTAAGTTCAAGAATTTATACAAATA AGGAAGCTCAGTTTTCAGTCACCTGCAAGCGATGCTACAGTGCCAGAGCTGTTATTTTTAGTGAAAAAAGTAACAAATCTCTAACCAGTCCATTTCCCTT GCAAGAACGTCATACTGCAGTGACAGTTACAAAAGACACAGGGATTAAAATTCATAATCAACCATTAGTGTCTGTCAGAACCCAGGAGAGTTGTTCTGAA GTGAAACAAAATACTTCTGCTTCTAGTAAGGCAACAAAACCTGAAAGTAGAACCCAGGATAGTTGTTCTACTTCCTCTTCTGGTAAGGCAACAAAAACTG AGAGTAGATCACGTAATTGGGGTGTCGTATGGAGGAAGAAGAACAATGAAGATACAGGAATTGATTTCAGGCATAAAAGCATTCTATTAAGGGGTAGTCC AAATGGAAACTGGTTAATGCCGGTGTGTAATCTGTGCAGAGAGGATTATAATTGTGATCTGATGTATATCCATTGCAAAACTTGTTCAAATTGGTTTCAT GCGGAAGCTGTAGAAGTTGAAGAGTCGAAACTTGCTGATGTTATAGGCTTCAAGTGTTGTAGGTGTCGTAGGATAAAATCACCAAATTGTCCTTACAGGG TTGATCATGGATATGAGAAGCTAGAGGTTATGAAGCCACAAAAGAGAGCATCGGAGCAAGGAATAGGAGCTGACTCTGGAACTATTGTTGAATCCAGAGG CTTTGAGCCAACTACTCCAATGTTACCTGTTGAGAACGTGTTTGTACAGGATGATGATCCTCTTCTTGTCTCTCTTTCAAGAGTTTACCAAATTACAGAG CAGAATCCTGGAGTGGATTTGGAATGTAACATTGCTGGACAAGGGCAGCAAAAGCTTCCAGTCAGAAGACAAGGAAAGCGCCAAGGAGATGCTGAAGATA TTTCTGGGACTAATATATACCATGCCGATTCATCCATGTTTCTTGAAACAAACAGTGCCATGAACTGTGAAGGGGAGATATCTTGTGCAGAATGGGATGT TTCTGGTAATGGCCTTGAAGGTGAGATGATGTTTGATTGTGAAGATGTAAACTACAAGGATACGGAGTTTGAACCACAAACATATTTCTTTTTAACGGAG TTGCTGGCATCTGATGATGGTGGCCAGTTGGATGGATTTGATGCCTCTGGGAATGGTTTGGGAAATTGTGAAAATCAGTTTCATGCAGTTTCAGCACACG AGTTCCCAAAGCAACATACAATGGGCACATCTTGTGACGCGTCTCTGCAATCTGCTCCTACCACAATGCCTTGTAAGATGTGTTCTGACTTGGTACCATC TCCTGATCTTTCTTGTGATATCTGTGGCTTAGTGTTGCACCGCCATTGTTCTCCTTGGGTTGAGTCTTCACCTGTAGAGGGCAGCTGGAGGTGTGGCAAT TGCCGAGAGTGGCGGTAG
AA sequence Show only first row Show all	>Potri.009G150200.1 pacid=42771252 polypeptide=Potri.009G150200.1.p locus=Potri.009G150200 ID=Potri.009G150200.1.v4.1 annot-version=v4.1 MEFTEVKKRGRGRPKKRKLNEEESEDKKLVASALKKQALGFRWKPLVGRYVLKEFGSEIFLGKIVYYDTGLYRVDYEDGGCEDLKSGEFRKIILGDGDFD DELVLRREKLDEFVLQKSEKRKVEAEKEVVDSKNELGGGLTVENEGVHDEDYADSSSDSCEHVRVGGLGMEVETPVAPPPQLPSSSGSIRVPDEYVSHLF SVYTFLRSFNIRLFLSPFTLDDLVGAINCSIQNTLLDAIHFALMRALRRRLEALSSDGSELASKCLRSVDWRLLDSLTWPVHLVHYFTIMGYANGAEWKG LYDHLWKREYYSLPVGRKLMILQILCDDALDSVELRAEVDICEESEVGLDPDVVTAILPDNGPTRVHPRCSKTSACKDRETMDIIAGSQGSKPFSNSKHL GSKGTERDGNASDADVDGNGDECRLCGMDGILLCCDGCPSSYHSRCIGVVKMYIPKGPWYCPECTINKLGPTISMRTSHRGAEVFGIDLYEQVFMGTCNH LLVLKASTGGEPCFRYYNLMEIPKVLQTLSESMQHRLLYSEICKAIVQHWNIPQSASSLLEKMERGFDIASVKEDAIFSTISLPFCEESHEVPENVVAEN AVTLNGSNTDIVAVSCLDTSLDASFQVGPQYIVSDGEMSRTGNCHLMSMKPHEQIKLESTESVNQLADPSGVTQQSRVDRSSAKELTTCTSANSVGSRIE NEIGNCLPAFVFSQSKEGNHPGFEMVERNSTNSCSYMGTFFKPHAYINHYMHGDFAASAAANLSVLSSEESHSETQKSGNGRKAISDILLQVKAFSTAAS RFFWPSSERKLVEVPRERCGWCHSCKQPSSNRRGCVLNSAALTATKGVSKIISGLRPVMNGEGSLSSISMYILCMGEILCGLTVGPFLSAIHRKQWCKQV EDASSYSAIKQPLLELEENIRLIALSGDWVKAMDDWLVESSVTHSSASIIGTAQRRGVNGKRHRKHSGVIDVAADGCHDKSFVWWRGGTLLKLVSNKAIL PQSMVKRAARQGGSRKISGIHYTDDLEILNRSRQLIWRAAVERSKNASQLALQVRYLDYHVRWSDLVRPEQNLQDGKGSETEASFFRNAVICDKKFEEKT IRYGIAFGNQKHLPSRIMKNIIEIEKTEDGKDKYWFSELHVPLYLIKEFEESVDVIPPSSNKPSNELSVLQRRQLRASRRDMFSYLAFKRDKLDKCSCAS CQCDVLIRNTVTCSSCQGYCHQDCTVSSRIYTNKEAQFSVTCKRCYSARAVIFSEKSNKSLTSPFPLQERHTAVTVTKDTGIKIHNQPLVSVRTQESCSE VKQNTSASSKATKPESRTQDSCSTSSSGKATKTESRSRNWGVVWRKKNNEDTGIDFRHKSILLRGSPNGNWLMPVCNLCREDYNCDLMYIHCKTCSNWFH AEAVEVEESKLADVIGFKCCRCRRIKSPNCPYRVDHGYEKLEVMKPQKRASEQGIGADSGTIVESRGFEPTTPMLPVENVFVQDDDPLLVSLSRVYQITE QNPGVDLECNIAGQGQQKLPVRRQGKRQGDAEDISGTNIYHADSSMFLETNSAMNCEGEISCAEWDVSGNGLEGEMMFDCEDVNYKDTEFEPQTYFFLTE LLASDDGGQLDGFDASGNGLGNCENQFHAVSAHEFPKQHTMGTSCDASLQSAPTTMPCKMCSDLVPSPDLSCDICGLVLHRHCSPWVESSPVEGSWRCGN CREWR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22760			PHD finger family protein (.1)		Potri.009G150200 [exp]	0	1
AT2G45590			Protein kinase superfamily pro...		Potri.002G150800 [exp]	4.24	0.6607
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	10.09	0.6748
AT1G18610			Galactose oxidase/kelch repeat...		Potri.012G062100 [exp]	13.22	0.6484
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	17.14	0.6326
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.003G137500 [exp]	42.53	0.6190
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	49.14	0.5857
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	54.31	0.5793
AT2G17787			unknown protein		Potri.005G242300 [exp]	54.79	0.5654
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	59.51	0.5839
AT3G07930			DNA glycosylase superfamily pr...		Potri.014G187766 [exp]	66.10	0.5922

Compare expression of checked genes

Potri.009G150200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.