Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22790 518 / 0 RER1 reticulata-related 1 (.1) AT2G37860 472 / 1e-165 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT5G12470 130 / 9e-34 Protein of unknown function (DUF3411) (.1) AT3G08640 119 / 5e-30 Protein of unknown function (DUF3411) (.1) AT3G08630 116 / 5e-29 Protein of unknown function (DUF3411) (.1) AT2G40400 100 / 2e-22 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G56140 100 / 2e-22 Protein of unknown function (DUF399 and DUF3411) (.1) AT5G24690 86 / 9e-18 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103100 [exp] 497 / 3e-175 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G051800 [exp] 136 / 5e-36 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 132 / 2e-34 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 129 / 2e-33 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 120 / 2e-30 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 118 / 8e-30 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 106 / 1e-24 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.003G019600 [exp] 86 / 8e-18 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 85 / 1e-17 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043364 [exp] 443 / 1e-154 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10012657 [exp] 414 / 8e-145 AT2G37860 414 / 1e-144 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10024346 [exp] 397 / 7e-139 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10019521 [exp] 214 / 1e-65 AT2G37860 280 / 1e-91 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10009956 [exp] 125 / 9e-32 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 123 / 4e-31 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 116 / 1e-28 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 115 / 1e-28 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10003242 [exp] 116 / 2e-28 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1) Lus10040960 [exp] 115 / 2e-27 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [poplar] [flax] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Potri.009G150400.1 pacid=42772397 polypeptide=Potri.009G150400.1.p locus=Potri.009G150400 ID=Potri.009G150400.1.v4.1 annot-version=v4.1 ATGTCAGTTTCTTCGCTGTACTGTAAACTCTCCCCTCTCTCCAACTCCTTTGCTTCCAAAGACGTCGCTCCGATCACCAATCTCACCGTCAAGATTTTCA GTTCCGTCAAAAGCCACTGCAACGATTTCCATTCTCATCCAATAAAATTAGTCTGCTCTTTCAACAATACCACTCACTCTGTTAAATGCTCCTTTTCTGA TTCTACCTCCGGTACCGTTACTAACGGTAATTTGAACGATGATCCCGGGGTTTTGGATATTGCTTCTGAGTTGAGAACTGATGGCGGCGATAATGGTTGT GGAGGTGATAATGGAGGTTCTTCTGGTAGTGGTGGTGGAGGAGGAGCAGGAGGTGGAGGAGACGGTGGTGATAGTGAGGAGGAGAAGGAGTTTGGACCGA TAATGAAATTCGAGGAAGTAATGAAGGAAATAGAGGCACGTGGAGTTGAGCTTCCTGCTGATATGATGGAAGCTGCTAAATCTATCGGGATTCGCAAAAT GTTTCTCCTTCGTTACCTCGATTTGCAGGGATCAGCTTGGCCACTAGGTGTTTTAATGAAGTACTGTACTATGCTGCGTAATCGAATGCTTGCTGATCCT TCTTTTCTTTTCAAAGTTGGAACAGAGATAGTTATCGATTCGTGTTGTGCAACGTTTGCGGAGGTCCAGAAGAGGGGAAAGGATTTCTGGTCAGAGTTTG AGTTGTATGCGGCGGATCTTTTGGTTGGGATTGTGGTTGACTTTGCTTTGGTTGGATTGTTAGCTCCTTATGCTCGTATTGGGAAGCCGGCTGTTTCAGG TGGGTTGTTTGGGAGCATACAGCAGGCATGTGCGGCTCTTCCTAGCAGTGTTTTTGAAGCTGAAAGGCCAGGATGCAAATTCTCTGTGAAACAGCGCACT GCTACCTACTTTTACAAGGGTGTGTTATATGGTTCAGTTGGGTTTGGGTGTGGACTTATTGGCCAAGGCATTGCTAATCTAATAATGACTGCCAAACGAA GCATAAAGAAATCAGATGAGGACATTCCTGTTCCACCTCTTGTGCAAAGTGCGGTTCTTTGGGGTGTGTTTCTTGCTTTATCTTCCAACACTCGCTACCA AATTATTAATGGACTGGAGCACCTGGTTGAAGCATCACCTGTGGCAAAACAGGTCCCACCTGTTGCCATGGCTTTCACTGTTGGTGTGCGATTTGCCAAC AATATTTATGGTGGTATGCAGTTCGTAGATTGGGCAAAATTGAGTGGGGTGCAATAG
AA sequence Show only first row Show all	>Potri.009G150400.1 pacid=42772397 polypeptide=Potri.009G150400.1.p locus=Potri.009G150400 ID=Potri.009G150400.1.v4.1 annot-version=v4.1 MSVSSLYCKLSPLSNSFASKDVAPITNLTVKIFSSVKSHCNDFHSHPIKLVCSFNNTTHSVKCSFSDSTSGTVTNGNLNDDPGVLDIASELRTDGGDNGC GGDNGGSSGSGGGGGAGGGGDGGDSEEEKEFGPIMKFEEVMKEIEARGVELPADMMEAAKSIGIRKMFLLRYLDLQGSAWPLGVLMKYCTMLRNRMLADP SFLFKVGTEIVIDSCCATFAEVQKRGKDFWSEFELYAADLLVGIVVDFALVGLLAPYARIGKPAVSGGLFGSIQQACAALPSSVFEAERPGCKFSVKQRT ATYFYKGVLYGSVGFGCGLIGQGIANLIMTAKRSIKKSDEDIPVPPLVQSAVLWGVFLALSSNTRYQIINGLEHLVEASPVAKQVPPVAMAFTVGVRFAN NIYGGMQFVDWAKLSGVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.002G176000 [exp]	1.00	0.8608
AT1G71840			transducin family protein / WD...		Potri.019G087200 [exp]	2.00	0.8332
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	8.00	0.8081
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	11.35	0.8185
AT3G20240			Mitochondrial substrate carrie...		Potri.008G004100 [exp]	15.96	0.7209
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.015G009000 [exp]	21.93	0.7777
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	22.58	0.7694	Pt-HDA9.2,HDA904
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.003G076600 [exp]	24.79	0.7065
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	25.69	0.7046
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	27.87	0.7881

Compare expression of checked genes

Potri.009G150400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.