Plant FIBer expression Database

Potri.009G150800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44830 205 / 3e-63 Lecithin:cholesterol acyltransferase family protein (.1)
AT5G13640 188 / 6e-57 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G190100
[exp]
258 / 3e-83 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
Potri.001G171000
[exp]
206 / 1e-63 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Potri.003G063100
[exp]
204 / 7e-63 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019519
[exp]
231 / 6e-73 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
Lus10043360
[exp]
209 / 5e-67 AT3G44830 581 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
Lus10015639
[exp]
202 / 1e-61 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Lus10037657
[exp]
198 / 2e-60 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Lus10021564
[exp]
196 / 7e-60 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
Lus10017165
[exp]
194 / 7e-59 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF02450 LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence
>Potri.009G150800.2 pacid=42770779 polypeptide=Potri.009G150800.2.p locus=Potri.009G150800 ID=Potri.009G150800.2.v4.1 annot-version=v4.1
ATGTTCTCATTCCTGATCAGCGTTTTTGGTGTTGGGATCCCTACTAAGAGATCATATGTCTACAAGCTATCACCAACTGATAGGTGCAAGAGCATTCCGT
TCCGAATTGATAGCTCAGTTGATGGAGATAAGGACAGTTGCTTGAGAGGTGGAGTGTACTTAACAGATGGTGATGAGAGCGTGCCTGTAATAAGTGCTGG
TTTCATGTGTGCGAAAGGGTGGAGAGGAAGAACCCGGTTCAATCCATCTGGCATCTCTACGCACATAAGAGAGTATCGGCACAAACCACCAGCTAGCCTC
CTTGAAGGAAGGGGTCTGGAGAGTGGAGCGCATGTGGACATCATGGGAAATCTTGCTTTAATATATGTTGTACTGAGAGTTGCCGCTGGAGCCAGGGGGG
CTGAAATTGGAGGTGACAAGGTATATTCGGATATATTCAGAATGTCCGAGAGAACAAATCTACGACTGTGA
AA sequence
>Potri.009G150800.2 pacid=42770779 polypeptide=Potri.009G150800.2.p locus=Potri.009G150800 ID=Potri.009G150800.2.v4.1 annot-version=v4.1
MFSFLISVFGVGIPTKRSYVYKLSPTDRCKSIPFRIDSSVDGDKDSCLRGGVYLTDGDESVPVISAGFMCAKGWRGRTRFNPSGISTHIREYRHKPPASL
LEGRGLESGAHVDIMGNLALIYVVLRVAAGARGAEIGGDKVYSDIFRMSERTNLRL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G44830 Lecithin:cholesterol acyltrans... Potri.009G150800
[exp]
0 1
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.008G093901
[exp]
4.12 0.9050
Potri.005G108850
[exp]
11.22 0.8980
AT1G60800 NIK3 NSP-interacting kinase 3 (.1) Potri.008G188800
[exp]
20.12 0.8636
AT5G54300 Protein of unknown function (D... Potri.012G037001
[exp]
21.97 0.8518
AT4G02550 unknown protein Potri.010G215600
[exp]
25.21 0.8893
AT4G10780 LRR and NB-ARC domains-contain... Potri.017G035300
[exp]
29.29 0.8886
Potri.001G076920
[exp]
30.01 0.8599
AT5G40840 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(... Potri.017G067400
[exp]
31.46 0.8725 SYN2.1
Potri.018G087450
[exp]
32.86 0.8092
AT1G77210 AtSTP14 sugar transport protein 14, su... Potri.009G048500
[exp]
34.46 0.8811

Potri.009G150800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.