Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22810 504 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03810 452 / 2e-160 GDSL-like Lipase/Acylhydrolase family protein (.1) AT5G03820 449 / 4e-159 GDSL-like Lipase/Acylhydrolase family protein (.1) AT3G16370 432 / 3e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G53100 422 / 2e-148 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 289 / 8e-96 SGNH hydrolase-type esterase superfamily protein (.1) AT2G04570 287 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 276 / 4e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G26790 274 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G20120 264 / 1e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118300 [exp] 477 / 7e-170 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.001G191400 [exp] 431 / 1e-151 AT3G16370 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G191600 [exp] 367 / 8e-126 AT3G16370 410 / 1e-142 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G144400 [exp] 338 / 6e-116 AT3G16370 375 / 2e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 286 / 1e-94 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 285 / 2e-94 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 282 / 9e-93 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 277 / 2e-91 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 276 / 1e-90 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008635 [exp] 454 / 8e-161 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10040791 [exp] 439 / 9e-155 AT5G03810 465 / 2e-165 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10008639 [exp] 437 / 4e-154 AT5G03810 463 / 2e-164 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006856 [exp] 436 / 8e-154 AT3G16370 507 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037598 [exp] 436 / 2e-153 AT3G16370 502 / 6e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035590 [exp] 420 / 1e-147 AT5G03810 427 / 1e-150 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10006855 [exp] 392 / 2e-136 AT3G16370 445 / 4e-157 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035585 [exp] 389 / 1e-135 AT5G03810 419 / 1e-147 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10013572 [exp] 293 / 2e-97 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 290 / 2e-96 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.009G151000.1 pacid=42772240 polypeptide=Potri.009G151000.1.p locus=Potri.009G151000 ID=Potri.009G151000.1.v4.1 annot-version=v4.1 ATGGGCTTTGCAAATTCTCTCTGTTCTTTCTTTCTTCTTCTTCTAGCTCTAGTACTCTATGAGGTCAATGCACAGCCTCTGGTCCCTGCAATGTTCATAT TTGGGGATTCAGTTGTTGATGCAGGCAACAACAATCACCTCTACACCATTATAAAAGCAAATTTCCCTCCTTATGGTAGAGACTTTGTCAATCATAAACC AACCGGCAGGTTCTGCAATGGAAAACTTGCTTCAGACTTAACTGCTGAGAACCTAGGTTTCACTTCTTACCCACCAGCCTATCTTAGCAAAAAAGCCAGA GGCAAGAACCTCCTGATCGGTGCCAACTTTGCCTCTGCTGCTTCTGGTTACTATGAAACTACTGCAAAGCTTTATCATGCAATCCCATTGAGTCAGCAAT TGGGGAACTACAAGGAATACCAGAATAAGATAGTAGGAATTGCAGGGAAATCCAATGCTTCATCAATCATATCCGGTGCACTCTATCTTATTAGTGCTGG TAGCAGTGATTTTGTTCAAAACTATTACATTAACCCTCTTCTCTACAAGGTCTACACTCTTGATCAGTTCTCAGATCTTCTCATACAATCCTTTACAAGT TTCATCGAGGATTTATACAAGCTGGGAGCGAGAAAAATTGGAGTGACATCACTGCCACCACTTGGATGCTTGCCAGCAACTGTCACAATATTTGGGTCTG ATAGCAATAAATGTGTGGCCAAGTTAAACAAAGTTGCAGTTTCCTTCAACAACAAGCTCAATTCCACATCTCAAAGCCTGGTAAACAAGCTTTCAGGCCT CAATTTGCTTGTTTTCGACATCTATCAACCTCTTTACGACCTTGTCACAAAGCCTGCTGACTTTGGATTTGTAGAGGCAAGAAAGGCTTGCTGTGGAACA GGATTGGTAGAAACATCAATATTGTGCAATGGAGAGTCTCCAGGAACATGTGCAAATGCGTCTGAGTATGTATTTTGGGACGGTTTTCATCCATCGGAGG CTGCAAACAAGATCTTAGCGGACGATTTGCTTACCAGTGGCATTTCTCTCATATTTTAA
AA sequence Show only first row Show all	>Potri.009G151000.1 pacid=42772240 polypeptide=Potri.009G151000.1.p locus=Potri.009G151000 ID=Potri.009G151000.1.v4.1 annot-version=v4.1 MGFANSLCSFFLLLLALVLYEVNAQPLVPAMFIFGDSVVDAGNNNHLYTIIKANFPPYGRDFVNHKPTGRFCNGKLASDLTAENLGFTSYPPAYLSKKAR GKNLLIGANFASAASGYYETTAKLYHAIPLSQQLGNYKEYQNKIVGIAGKSNASSIISGALYLISAGSSDFVQNYYINPLLYKVYTLDQFSDLLIQSFTS FIEDLYKLGARKIGVTSLPPLGCLPATVTIFGSDSNKCVAKLNKVAVSFNNKLNSTSQSLVNKLSGLNLLVFDIYQPLYDLVTKPADFGFVEARKACCGT GLVETSILCNGESPGTCANASEYVFWDGFHPSEAANKILADDLLTSGISLIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22810			GDSL-like Lipase/Acylhydrolase...		Potri.009G151000 [exp]	0	1
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	2.00	0.9735
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	2.44	0.9860
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Potri.014G080200 [exp]	4.24	0.9761
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Potri.012G056300 [exp]	4.24	0.9763
AT5G06090		ATGPAT7, GPAT7	glycerol-3-phosphate acyltrans...		Potri.008G058200 [exp]	6.32	0.9730
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	7.34	0.9724
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G072600 [exp]	7.74	0.9423
AT1G68850			Peroxidase superfamily protein...		Potri.008G110600 [exp]	8.36	0.9701
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	8.48	0.9683
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050300 [exp]	8.94	0.9617

Compare expression of checked genes

Potri.009G151000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.