Plant FIBer expression Database

Potri.009G151100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22820 499 / 4e-173 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020518
[exp]
507 / 6e-177 AT5G22820 436 / 2e-149 ARM repeat superfamily protein (.1.2)
Lus10005366
[exp]
371 / 1e-124 AT5G22820 310 / 2e-101 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.009G151100.1 pacid=42771168 polypeptide=Potri.009G151100.1.p locus=Potri.009G151100 ID=Potri.009G151100.1.v4.1 annot-version=v4.1
ATGGCGTTGGAATCAAAATCAAACCCGCTAGAAGAACACCAAGACGAAGACGACGACGTAGAGGAAGATACCCGTCACAATGAAGATGAACTTGCACGCA
ACCCTTCTGCACCGCCCGATTATGAGTTTTTTGAAATTACAACAACCGTTGATCCTAGTTACATCATCTCTTTGATTCGGAAACTTATTCCGATCGATTC
CGTGACCAGTCGTGATTCTCGTGGAGTTAACGGCAGTGATGATGGCGGCCGTGGTGATACGAATCAAATGGTGGAAGAGAGTGGAAATGAGTGTGAGAAA
ATGGACATAGTTAATGATGGTAGTCGAGGAGGAGAAGATAAGGACACGTGTCGTGGATTGGCAGGGGACGAGGTTTGGGAAGAGTATGGTTGCGTTTTGT
GGGATCTTGCGGCGAGTAGAACTCATGCTGAACTCATGGTGCAAAACCTTGTGCTTGAAGTGCTTATGGCTAACCTTACGGTTTCGCAATCAGCACGTGT
TACAGAAATCTGTCTTGGCATTATTGGAAACCTAGCCTGCCATGAAGCCCCAATGAAGCATATAGTCTCTGCAAATGGGCTGATTTCAACAATTGTGGAT
CAATTGTTTTCAGATGACACTCAATGCCTAGCTGAAGCTTGTAGGTTGTTAACTTTGGGTCTTCAAGGTAATGAATGTTGTCCCTGGGCTGAGGCAGTGC
AGTCTGAACATATTCTTTGTCGTATTATATGGATTGCAGAAAATACCTTAAATCCGCAGCTTTTAGAGAAGAGTGTAGGACTGATACTAGCTATTCTAGA
AAGTCAACAGGAAGCTTCATGTACCATTGTCCCATCCTTGATGAAGCTGGGTTTACCAAGTCTATTGATCAACCTCTTGGATTTTGAAATGAGCAGATTA
ACAGAGGAAAGAGTACCTGAAAGGTACTCTGTTCTTGATGTAATTCTTCGTGCAATTGAAGCTCTTTCCATTTTGGATGGTCATTCCCAAGAAATCTGCT
CTAATAAGAAACTTCTCCAGCTAGTTTGTGACCTGATCAAACTCCCGGATAAAGCTGAGGTTGCTAGCTCTTGTGTTACTGTTGCTGTCTTGATTGCGAA
TATTCTGTCTGATGTGCCTAATTTAGCCTCAGAGATGTCACAAGATTTGCCATTCTTACAGGGACTGCTCGAGGTATTTCCCTTGGCTTCAGATGATGTA
GAAGCAAGGAGTGCTCTGTGGAGCATTATTGCAAGGTTACTCGTTCGAGCTAGAGAAAATGACATGAGCCTGTCAAGCCTGCATCAGTATGTGTTGGTTC
TAGCAAGAAAATCTGAGATTATTGAAGATGATCTTCTCAACCGACAATCAGATAATTCCTGTGAAGAAACCAAGGACCTGACCAGTTGTAGCTCAAAATC
AAATCGAAGTACAGCTCTGACAAGAATAGTCAGTATTTTAAATCAGTGGACAGCTTCAAAGGATTCAAAGGATTGTCTTGGTGGGGATGATGCGGCAGGA
GAACATTCTGCAGATGAGTTAAATGTTGGGAGATTGTTAGATTGCTGCCGAAAACATATCGATTTCACCGAGTAA
AA sequence
>Potri.009G151100.1 pacid=42771168 polypeptide=Potri.009G151100.1.p locus=Potri.009G151100 ID=Potri.009G151100.1.v4.1 annot-version=v4.1
MALESKSNPLEEHQDEDDDVEEDTRHNEDELARNPSAPPDYEFFEITTTVDPSYIISLIRKLIPIDSVTSRDSRGVNGSDDGGRGDTNQMVEESGNECEK
MDIVNDGSRGGEDKDTCRGLAGDEVWEEYGCVLWDLAASRTHAELMVQNLVLEVLMANLTVSQSARVTEICLGIIGNLACHEAPMKHIVSANGLISTIVD
QLFSDDTQCLAEACRLLTLGLQGNECCPWAEAVQSEHILCRIIWIAENTLNPQLLEKSVGLILAILESQQEASCTIVPSLMKLGLPSLLINLLDFEMSRL
TEERVPERYSVLDVILRAIEALSILDGHSQEICSNKKLLQLVCDLIKLPDKAEVASSCVTVAVLIANILSDVPNLASEMSQDLPFLQGLLEVFPLASDDV
EARSALWSIIARLLVRARENDMSLSSLHQYVLVLARKSEIIEDDLLNRQSDNSCEETKDLTSCSSKSNRSTALTRIVSILNQWTASKDSKDCLGGDDAAG
EHSADELNVGRLLDCCRKHIDFTE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22820 ARM repeat superfamily protein... Potri.009G151100
[exp]
0 1
AT4G33360 FLDH farnesol dehydrogenase, NAD(P)... Potri.002G127500
[exp]
5.47 0.7426
AT5G54730 ATATG18F ARABIDOPSIS THALIANA HOMOLOG O... Potri.011G132700
[exp]
9.48 0.7578
AT4G23860 PHD finger protein-related (.1... Potri.001G091600
[exp]
15.03 0.6808
Potri.008G024601
[exp]
16.43 0.7854
AT3G20020 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN A... Potri.014G004000
[exp]
18.00 0.7700
AT3G18210 2-oxoglutarate (2OG) and Fe(II... Potri.012G051200
[exp]
18.65 0.7597
AT5G51230 C2H2ZnF AtEMF2, CYR1, V... CYTOKININ RESISTANT 1, EMBRYON... Potri.003G150450
[exp]
18.97 0.7400
AT2G18410 unknown protein Potri.017G115566
[exp]
19.59 0.7579
AT4G03415 Protein phosphatase 2C family ... Potri.013G144100
[exp]
20.12 0.6713
AT2G17975 zinc finger (Ran-binding) fami... Potri.005G115100
[exp]
24.00 0.7187

Potri.009G151100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.