Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65620 185 / 6e-54 Zincin-like metalloproteases family protein (.1) AT5G10540 184 / 9e-54 Zincin-like metalloproteases family protein (.1) AT1G67690 40 / 0.0009 Zincin-like metalloproteases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004600 [exp] 189 / 1e-55 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010100 [exp] 188 / 7e-55 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.010G054466 [exp] 41 / 0.0006 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019236 [exp] 181 / 4e-52 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10004276 [exp] 168 / 1e-47 AT5G10540 1183 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10037058 [exp] 42 / 0.0002 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 42 / 0.0005 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01432 [poplar] [flax] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Potri.009G151300.4 pacid=42772406 polypeptide=Potri.009G151300.4.p locus=Potri.009G151300 ID=Potri.009G151300.4.v4.1 annot-version=v4.1 ATGGCAGCCGATTATCAATACAACAATCCCTTGCTGGAGGACTTCCTCTTTCCTCCTTATGATGCCATCCAGCCCAAGCACGTCTCCCCTGCCATCCTCT CACTCTTGGACCAGCTTGAGAGTAATTTGGTTGAGTTAGAGACTAGAGGAGAACCAACATGGCCAAAATTGGTGGAACCATTGGAGAAGATTAAAGACAG ATTATCTGTTGTTTGGGGGATTGTGAACCATCTGAATGCTGTTATGGATTCTCCTGAACTTCGTTCAGCCATCGAAGAAGTCCAGCCAGAGAAGGTAAAG TTCCAGCTTAGATTGGACCAAAGTAAACCTGTATACACTGCATTTAAAGCCATTCGACAATCTTCTGAATGGGAGAGCTTGAACGAGCTACGATTTGCAA GTGTGGATTTGGAGCTCCATAAAAATTATATTCCAGGTGGGCTAGAATCTGTCTTTGATATTGATCAAAGAGTGAGTAGAAAGACACAAGTGATGCCCCT ACAACCAGAGGACAGATTCCTCTGTAGTTTCAGTCACATATTTGCAGATACATATGCAGCTGGTTACTATTGCTACCAGTGGGCAGAGGTATTAGCTGCC GATGCTTTCTCGGCATTTGAGGAGGCTGGCTTGAATAATGAAAAGGCTGTCAAAGAAACTGGTATCAAGTTTCGAGAAACTGTTCTAGCACTTGGTGGTG GAAAATCACCCCTCCAGGTCATACCAGTTTAA
AA sequence Show only first row Show all	>Potri.009G151300.4 pacid=42772406 polypeptide=Potri.009G151300.4.p locus=Potri.009G151300 ID=Potri.009G151300.4.v4.1 annot-version=v4.1 MAADYQYNNPLLEDFLFPPYDAIQPKHVSPAILSLLDQLESNLVELETRGEPTWPKLVEPLEKIKDRLSVVWGIVNHLNAVMDSPELRSAIEEVQPEKVK FQLRLDQSKPVYTAFKAIRQSSEWESLNELRFASVDLELHKNYIPGGLESVFDIDQRVSRKTQVMPLQPEDRFLCSFSHIFADTYAAGYYCYQWAEVLAA DAFSAFEEAGLNNEKAVKETGIKFRETVLALGGGKSPLQVIPV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65620			Zincin-like metalloproteases f...		Potri.009G151300 [exp]	0	1
AT3G52740			unknown protein		Potri.009G163900 [exp]	1.00	0.9706
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.002G056800 [exp]	3.74	0.9653
AT5G62680			Major facilitator superfamily ...		Potri.012G071500 [exp]	4.58	0.9485
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	5.74	0.9530	PGR5.2
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.010G166200 [exp]	8.06	0.9392
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.015G022100 [exp]	9.00	0.9467
					Potri.015G143150 [exp]	9.38	0.9475
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	9.48	0.9493
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.009G125600 [exp]	10.00	0.9496
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	10.19	0.9508	Pt-SIGE.3

Compare expression of checked genes

Potri.009G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.