Plant FIBer expression Database

ATMGT10.1 (Potri.009G151400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATMGT10.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G22830 496 / 3e-174 MRS2-11, GMN10, ATMGT10 MAGNESIUM TRANSPORTER 10, magnesium (Mg) transporter 10 (.1)
AT5G09690 62 / 4e-10 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4)
AT3G19640 42 / 0.0007 MRS2-3, MGT4 magnesium transporter 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G098000
[exp]
51 / 1e-06 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1)
Potri.007G098200
[exp]
50 / 2e-06 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020517
[exp]
552 / 0 AT5G22830 560 / 0.0 MAGNESIUM TRANSPORTER 10, magnesium (Mg) transporter 10 (.1)
Lus10005365
[exp]
548 / 0 AT5G22830 558 / 0.0 MAGNESIUM TRANSPORTER 10, magnesium (Mg) transporter 10 (.1)
Lus10008803
[exp]
43 / 0.0004 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2)
PFAM info
Representative CDS sequence
>Potri.009G151400.5 pacid=42772022 polypeptide=Potri.009G151400.5.p locus=Potri.009G151400 ID=Potri.009G151400.5.v4.1 annot-version=v4.1
ATGGCTTTATCTCTTCAACTTCCGCCGGCACTACCTAACCACCACCTCCTCTTCTCTTACTCTACACTCCCATCCTCCTCACCTCCTCCTCTCTCTCTCA
TCCACAAGAAAAAATTATGTCCACTGCTTCCCATCGCCGTGAGATCATCTTCCAGAGTCAAATGTTTGACCAAATCAACGGAGGAGGATCGAAGCGAACA
AGAAAGCAGCTTAGTCTCTGACTCTGATGTCGGAGAAGAAGCAGAAATCAGAGAAGACACTAAAGTCCAGCTCCAACAGAACAAGAGGATTCCAACAACA
TCGTCGTTTGGTGATTCTCTCTCCCTTGGGATTCGTGAGCATGTTTATGAGGTTGTAGAAGTTAAGCCAAATGGAATGGTATCCACTCGGAAAATAAACA
GGCGTCAGTTACTCAAGTCTAGCGGTCTGCGACCAAGAGATATTCGCAGTGTTGATCCATCATTATTTTTGACAAACTCAATGCCCTCTTTGCTGGTTCG
TGAGCACGCTATCTTACTCAATCTGGGCTCATTGCGAGCGATAGCAATGCAAGAATGTGTTCTTATATTTGACTATAATCGGAGAGGAGGAAAAGCTTTT
ATAGATACCCTGTTGCCTCGGTTGAACCCCAGAAACTCGAATGGAGGGCCATGCATGCCGTTTGAGCTTGAGGTCAGTGAGGTTGTTGAAGCAGCATTGC
TATCACGAGTACAACGTTTGGAGCAGAGACTGATGAATATAGAACCTCGTGTTCAAGCTTTACTCAAGGTTTTGCCCAACCGGTTAACTGCAGATATACT
GGAGGAACTTCGTATTAGCAAGCAAGCCTTGGTTGAATTGGGTTCAAGGGCAGGGGCTCTTCGTCAAATGCTGCTTGATCTTTTGGAGGACGAACATGAA
ATACGCAGGATATGTATAATGGGAAAAAACTGCAAACTCAAAGGAAATGACGTTGTGGAATGCTCTGTTCCCTTAGAAAAGCAAATTGCTGAAGAAGAGG
AGGAAGAAATTGAGATGCTTTTGGAAAATTACCTTCAGAGATCTGAATCTTGTCATGGTCAGGCAGAAAGACTTCTTGATTCTGCAAAAGAAATGGAAGA
TTCCATTGCTGTTAACTTAAGCTCGCGGAGGCTTGAGGTGAGCAGAGTGGAATTACTTCTCCAGGTTGGGACATTTTGTGTGGCTGTGGGTGCTCTAGTT
GCAGGTATATTTGGCATGAATTTGAAGTCCTATCTTGAAGAGCATGTGTTTGCTTTTTGGTTAACAACAGCTGGGATAATTTTTGGTGCTGTTGTGGCAT
TTTTTCTCACGTATTCATATCTTAGAACTAGGAAGATACTGTAA
AA sequence
>Potri.009G151400.5 pacid=42772022 polypeptide=Potri.009G151400.5.p locus=Potri.009G151400 ID=Potri.009G151400.5.v4.1 annot-version=v4.1
MALSLQLPPALPNHHLLFSYSTLPSSSPPPLSLIHKKKLCPLLPIAVRSSSRVKCLTKSTEEDRSEQESSLVSDSDVGEEAEIREDTKVQLQQNKRIPTT
SSFGDSLSLGIREHVYEVVEVKPNGMVSTRKINRRQLLKSSGLRPRDIRSVDPSLFLTNSMPSLLVREHAILLNLGSLRAIAMQECVLIFDYNRRGGKAF
IDTLLPRLNPRNSNGGPCMPFELEVSEVVEAALLSRVQRLEQRLMNIEPRVQALLKVLPNRLTADILEELRISKQALVELGSRAGALRQMLLDLLEDEHE
IRRICIMGKNCKLKGNDVVECSVPLEKQIAEEEEEEIEMLLENYLQRSESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALV
AGIFGMNLKSYLEEHVFAFWLTTAGIIFGAVVAFFLTYSYLRTRKIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G22830 MRS2-11, GMN10,... MAGNESIUM TRANSPORTER 10, magn... Potri.009G151400
[exp]
0 1 ATMGT10.1
AT5G19850 alpha/beta-Hydrolases superfam... Potri.003G219700
[exp]
2.64 0.9589
AT5G50100 Putative thiol-disulphide oxid... Potri.015G072000
[exp]
3.87 0.9477
AT5G64840 ABCF5, ATGCN5 ATP-binding cassette F5, gener... Potri.007G080600
[exp]
6.00 0.9550 GCN2.1
AT5G02540 NAD(P)-binding Rossmann-fold s... Potri.006G083900
[exp]
6.48 0.9430
AT3G24190 Protein kinase superfamily pro... Potri.001G050700
[exp]
6.63 0.9477
AT1G50020 unknown protein Potri.001G289400
[exp]
7.00 0.9425
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Potri.016G116400
[exp]
9.38 0.9397 Pt-PDX1.2
AT1G22850 SNARE associated Golgi protein... Potri.013G099600
[exp]
9.79 0.9478
AT5G35970 P-loop containing nucleoside t... Potri.013G073900
[exp]
12.48 0.9309
AT5G47240 ATNUDT8 nudix hydrolase homolog 8 (.1) Potri.018G069100
[exp]
15.09 0.9202

Potri.009G151400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.