Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44850 735 / 0 Protein kinase superfamily protein (.1) AT5G22840 712 / 0 Protein kinase superfamily protein (.1) AT3G53030 707 / 0 SRPK4 ser/arg-rich protein kinase 4 (.1) AT2G17530 249 / 9e-78 Protein kinase superfamily protein (.1.2.3) AT4G35500 251 / 2e-77 Protein kinase superfamily protein (.1.2) AT4G24740 106 / 1e-24 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 105 / 2e-24 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 104 / 1e-23 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT5G35980 100 / 5e-22 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G73450 99 / 2e-21 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190400 [exp] 923 / 0 AT3G44850 769 / 0.0 Protein kinase superfamily protein (.1) Potri.006G117800 [exp] 758 / 0 AT3G53030 740 / 0.0 ser/arg-rich protein kinase 4 (.1) Potri.007G063100 [exp] 256 / 2e-79 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G102100 [exp] 251 / 2e-77 AT2G17530 703 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G244400 [exp] 108 / 2e-25 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G085700 [exp] 104 / 5e-24 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 104 / 6e-24 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 103 / 2e-23 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 100 / 2e-22 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005363 [exp] 719 / 0 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10020515 [exp] 717 / 0 AT5G22840 684 / 0.0 Protein kinase superfamily protein (.1) Lus10005364 [exp] 655 / 0 AT3G53030 653 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10020516 [exp] 650 / 0 AT3G53030 647 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10035984 [exp] 256 / 3e-79 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016690 [exp] 255 / 7e-79 AT4G35500 683 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019458 [exp] 106 / 2e-24 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10025301 [exp] 105 / 4e-24 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10024431 [exp] 105 / 5e-24 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10043309 [exp] 104 / 6e-24 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.009G151500.1 pacid=42771522 polypeptide=Potri.009G151500.1.p locus=Potri.009G151500 ID=Potri.009G151500.1.v4.1 annot-version=v4.1 ATGGCAGAGGATAGGAATGGGGATCGAAGTGAAGAGAGTGATTACACATCAGAAGATGAGGGAACGGAGGATTATAGGAGAGGAGGGTACCATGCTGTGA GAATCGGTGATACATTCAAGAATGGGAGGTATGTGGTGCAAGGCAAGCTTGGTTGGGGTCATTTCTCTACGGTTTGGCTCGCTTGGGACACTCAGGGATC GCGTTATGTAGCTTTGAAAGTTCAAAAGAGCGCTCAACACTACACCGAGGCAGCCATGGATGAGATAAAGATCCTTGAACAGATTGCCGAGGGAGACCCT GATGATAAAAAGTGTGTTGTCAAGCTTTTGGATCATTTCAAGCATTCAGGGCCTAATGGACAGCACGTTTGTATGGTTTTTGAGTACTTGGGAGATAACC TCTTGACCCTTATTAAGTACAGTGATTACCGAGGGGTTCCTCTACACATGGCAAAAGAGATATGCTTTCATATATTAGTGGGTTTGGATTACTTGCATCG CCAACTCTCAATCATCCACACTGATTTGAAGCCAGAAAATGTCCTGCTTTTGTCAATGATTGATACATCAAAAGATCACAGGAAATCAGGTGCTCCTCTT ATCCTTCCAACCAGCAAGAACAAAATCGTGGCTGAATCTAGTTCTTCCAAAGAAATCAAGAGTTTGAATGGGGATTTGACAAGGAACCAAAAAAAGAAAA TTCGAAAGAAGGCTAAGAAGGCAGCTCAAAGTTGTGCGCAGAAAGAAGCTTCCTCGGAAAACGATGCTGATCCCAAACCAACTAGTCCTGAAGATTCTAA TGTTGATGCAAAATCAAATGAAGATTCTGTCGATGAACAATCAAATGGTTCTGTGATTAAAGATGATTCAGCAAACACTGATGGGCAGAAGGATGCTTGC CAAGCAAAACGCAGCAGAAGGGGGAGCCGCTCTACAAGGCAAAAGCTATTGGCTGCTGCTGATCTAAAGTGTAAATTGGTAGATTTTGGAAATGCTTGTT GGACATACAAACAGTTTACAAGTGATGTTCAGACAAGACAGTATAGATGTCCAGAGGTTCTTCTGGGATCTAAATACTCCACTCCAGTAGATCTTTGGTC CTTTGCTTGCATTTGTTTCGAGCTTGCCACTGGCGATGTCCTTTTTGATCCTCACAGTGGTGACAACTATGATAGAGACGAGGATCACTTGGCATTGATG ATGGAACTCCTCGGCGTGATGCCGCGCAAGGTTGCATTAGGTGGTCGCAATTCTCGGGATTTCTTCAATAGATATGGAGATTTGAGGCATATTCGTAGGT TGCGTTTTTGGCCTCTCACAAAGGTGCTTATGGAGAAGTACGATTTCAGCGAGCAAGATGCTAATGACTTGAATAACTTCCTTGTTCCCTTACTTGATTT TGTGCCTGAAAAGAGACCGACAGCAGCTCAATGCCTAAATCATCCATGGATCGCTGCTGGTCCTCGTCTGCTTGAGCCTTCCATGCCAAGTTTCAAGCAC GAGACAAAAGATGGGAATATATCTGAAACCGAGAAGGATGAGAGGGAGGCTATGGAAGCTGGAATAGGAAATATAGTCATTGACGGAGCTTCAAAAAAAT CCAAAAAACTGCCCTATGGAAAATCCTTTGAAATACACATAATATAA
AA sequence Show only first row Show all	>Potri.009G151500.1 pacid=42771522 polypeptide=Potri.009G151500.1.p locus=Potri.009G151500 ID=Potri.009G151500.1.v4.1 annot-version=v4.1 MAEDRNGDRSEESDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYVVQGKLGWGHFSTVWLAWDTQGSRYVALKVQKSAQHYTEAAMDEIKILEQIAEGDP DDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGVPLHMAKEICFHILVGLDYLHRQLSIIHTDLKPENVLLLSMIDTSKDHRKSGAPL ILPTSKNKIVAESSSSKEIKSLNGDLTRNQKKKIRKKAKKAAQSCAQKEASSENDADPKPTSPEDSNVDAKSNEDSVDEQSNGSVIKDDSANTDGQKDAC QAKRSRRGSRSTRQKLLAAADLKCKLVDFGNACWTYKQFTSDVQTRQYRCPEVLLGSKYSTPVDLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALM MELLGVMPRKVALGGRNSRDFFNRYGDLRHIRRLRFWPLTKVLMEKYDFSEQDANDLNNFLVPLLDFVPEKRPTAAQCLNHPWIAAGPRLLEPSMPSFKH ETKDGNISETEKDEREAMEAGIGNIVIDGASKKSKKLPYGKSFEIHII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44850			Protein kinase superfamily pro...		Potri.009G151500 [exp]	0	1
AT5G60580			RING/U-box superfamily protein...		Potri.016G022900 [exp]	2.23	0.8002
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G118100 [exp]	8.71	0.7844
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Potri.001G075700 [exp]	9.79	0.7602
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.009G119200 [exp]	10.00	0.7270
AT5G51670			Protein of unknown function (D...		Potri.012G129900 [exp]	12.04	0.7644
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	15.96	0.7388
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	22.11	0.7786
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	24.97	0.7638
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Potri.002G049300 [exp]	26.83	0.7413
AT1G77610			EamA-like transporter family p...		Potri.002G084500 [exp]	29.22	0.7633

Compare expression of checked genes

Potri.009G151500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.