Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21990 699 / 0 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G21640 82 / 2e-16 FKBP42, UCU2, TWD1, ATFKBP42 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48570 79 / 3e-15 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 73 / 2e-13 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT1G58450 68 / 3e-13 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30480 64 / 5e-11 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT2G42580 48 / 2e-05 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT2G42810 47 / 3e-05 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G56440 45 / 0.0001 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G65160 45 / 0.0002 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190600 [exp] 982 / 0 AT5G21990 693 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G156250 [exp] 102 / 4e-26 AT5G21990 73 / 2e-16 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G059200 [exp] 79 / 1e-15 AT3G21640 548 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 79 / 2e-15 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G264400 [exp] 78 / 2e-15 AT3G21640 556 / 0.0 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 79 / 4e-15 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.006G178900 [exp] 68 / 2e-12 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.006G033400 [exp] 66 / 5e-11 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.018G100700 [exp] 63 / 1e-10 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036162 [exp] 708 / 0 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10019379 [exp] 701 / 0 AT5G21990 658 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029505 [exp] 83 / 3e-17 AT3G21640 409 / 5e-144 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10039604 [exp] 82 / 1e-16 AT3G21640 327 / 3e-110 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10025888 [exp] 81 / 6e-16 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 81 / 1e-15 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10002338 [exp] 75 / 1e-13 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 73 / 4e-13 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10035117 [exp] 65 / 3e-11 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 65 / 9e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.009G151700.1 pacid=42771240 polypeptide=Potri.009G151700.1.p locus=Potri.009G151700 ID=Potri.009G151700.1.v4.1 annot-version=v4.1 ATGTTTAACGGAATGATGGATCCCGAGTTAATAAAAATCGCTCAGGAACAGATGAGTCGCATGACACCCGCCGATTTCGCCAGGATCCAGCAACAGGTAA TGTCTAATCCTGAGTTGGTGAAAATGGCATCGGAAGGCATGAGAAACATGAGGCCTGAGGACTTGAAACAGGCAGCAGAGCAGTTAAAGCATACACGCCC TGAAGAGATGGCAGAGATTGGTGAGAAAATGATCAATGCATCACCAGAAGAGATTGCTGCCATGCATGCCCGTGCTGATGCACAGGCCACATATGAAATG AATGCAGCTCAGATGTTGAAGAAACAGGGTAATGAGCTGCATAGCCAAGGAAAGTTCAAAGATGCTTCGCAGAAATATTTGCTTGCAAAGCAAAATCTTA AAGGGATTCCATCTTCCAAAGGCAGAACACTTTTGTTGGCATGCTCTCTTAATTTAATGTCTTGTTACTTGAAAACAAAGCAATACGATGAATGCATAAA AGAGGGCTCGGAGGTTTTGGGTTATGATGCCAAAAATGCTAAAGCCCTTTATAGAAGGGGTCAAGCCTACAGGGAACTAGGCCAACTGGAAGTTGCTGTC TCTGATTTGAGGAAAGCACATGAAGTTTCCCCTGATGATGAAACTATTGCAGACATTTTAAGGAATGCTGAGGAAAGATTGGCTCAAGAAGGTGGCTATC ATGCACCAAGAGGAGTGATAATTGAAGAAATAACTGAAGAAGCTGAGACTGTCTCTGAAAACCTTAAGAGTTCATCAGCAAGGGAAAGCGTTGATACATC CAAAAGTGGAAGGGAAGCTCGTAGTGGGAGTTCAACATCTAATCCAGAGCCTCTGGAGGCTTTGAAAGATGACCCAGAAGCTATGAGGTCATTCCAAAAT TTCATATCTAATGCCAATCCTGAAACTTTGGCTGCTTTAAGTGGTGCAAAAGCTGGAGAGGTATCTCCTGAGATGTTTAAGACGGCATCAAATATGATCG GGAAGATGCCACCCGAAGAGCTTCAAAAAATGCTTCAAATGGCTTCCTCGTTCCAGGGGGAGAATCCTCTTACTGCAGGATCTTCAGATAGCGGTTTTAA TGGCTTCAGACCAGGTGCAGTTCCTCCAAATGTGACGCCAGACATGCTTAAAACAGCAAGTGATATGATGAGTAAGATGCCATCGGAAGAGCTTCAGAAA ATGTTTGAAATGGCATCTTCTTTGAGAGGAAATGGCTTGGCTCCAGCTGCTGCTGCAGCTTTAAACACTGAGGGACCAAGTTTGAGTGCTAGGTTAAAAC CAACAGAAACTCAAGAATATTTTGCAGTTAATGGGAATAATGGCATCAGTGAAACTAGTTCCTCTGGTGATTTCCTTTCAAGTTCAAGAAATGCTCCTCC ATCTAGCTTTCCTGCCTCAACATCTGATATGCAGGAACAGATGAGAAACCAAATGAAGGATCCAGCTATGCGGCAGATGTTCACGTCAATGATGAAGAAT TTGAGCCCAGAGATGATGGCTAACATGAGTGAACAATTTGGAATAAAACTTTCTCAAGAAGATGCAGCGAAAGCTCAACAGGCCATGTCATCTTTCTCAC CGGAGGACTTAGATAAAATGATGCGATGGGCTGATAGGATCCAAAGAGGAGCGGAAGGTGCAAAGAAAGCAAAGAACTGGTTACTGGGGAGACCTGGTAT GATTCTTGCTATTTGTATGTTGATCTTAGCTGTTATCCTCCGCTGGCTAGGCTTCATCGGGAGGTAG
AA sequence Show only first row Show all	>Potri.009G151700.1 pacid=42771240 polypeptide=Potri.009G151700.1.p locus=Potri.009G151700 ID=Potri.009G151700.1.v4.1 annot-version=v4.1 MFNGMMDPELIKIAQEQMSRMTPADFARIQQQVMSNPELVKMASEGMRNMRPEDLKQAAEQLKHTRPEEMAEIGEKMINASPEEIAAMHARADAQATYEM NAAQMLKKQGNELHSQGKFKDASQKYLLAKQNLKGIPSSKGRTLLLACSLNLMSCYLKTKQYDECIKEGSEVLGYDAKNAKALYRRGQAYRELGQLEVAV SDLRKAHEVSPDDETIADILRNAEERLAQEGGYHAPRGVIIEEITEEAETVSENLKSSSARESVDTSKSGREARSGSSTSNPEPLEALKDDPEAMRSFQN FISNANPETLAALSGAKAGEVSPEMFKTASNMIGKMPPEELQKMLQMASSFQGENPLTAGSSDSGFNGFRPGAVPPNVTPDMLKTASDMMSKMPSEELQK MFEMASSLRGNGLAPAAAAALNTEGPSLSARLKPTETQEYFAVNGNNGISETSSSGDFLSSSRNAPPSSFPASTSDMQEQMRNQMKDPAMRQMFTSMMKN LSPEMMANMSEQFGIKLSQEDAAKAQQAMSSFSPEDLDKMMRWADRIQRGAEGAKKAKNWLLGRPGMILAICMLILAVILRWLGFIGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21990		OEP61, TPR7	tetratricopeptide repeat 7, ou...		Potri.009G151700 [exp]	0	1
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	2.44	0.9179	Pt-CRCK3.2
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	5.09	0.9102
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	5.47	0.9046
AT3G51580			unknown protein		Potri.019G058400 [exp]	7.48	0.8850
AT5G42440			Protein kinase superfamily pro...		Potri.002G065400 [exp]	8.00	0.9003
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	8.77	0.8911
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074700 [exp]	9.48	0.8836	Pt-EDS1.3
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	11.48	0.8921
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	11.83	0.8544
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	11.95	0.8817

Compare expression of checked genes

Potri.009G151700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.