Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19170 159 / 2e-44 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT4G18350 107 / 7e-26 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT1G30100 102 / 3e-24 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G14440 99 / 7e-23 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G78390 92 / 2e-20 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G24220 89 / 2e-19 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT3G63520 86 / 9e-19 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G151900 [exp] 443 / 3e-154 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152200 [exp] 439 / 1e-152 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 380 / 1e-129 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.019G093400 [exp] 178 / 2e-51 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 178 / 2e-51 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.011G084100 [exp] 100 / 3e-23 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.001G393800 [exp] 94 / 2e-21 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.003G176300 [exp] 94 / 2e-21 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.011G112400 [exp] 93 / 5e-21 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035696 [exp] 158 / 4e-44 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10008443 [exp] 151 / 5e-43 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10035700 [exp] 143 / 2e-41 AT4G19170 227 / 9e-71 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029512 [exp] 94 / 2e-23 AT3G63520 211 / 9e-67 carotenoid cleavage dioxygenase 1 (.1) Lus10011750 [exp] 98 / 1e-22 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10029513 [exp] 95 / 2e-21 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 93 / 7e-21 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10016410 [exp] 92 / 2e-20 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 89 / 2e-19 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10042482 [exp] 50 / 9e-07 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.009G152000.2 pacid=42771213 polypeptide=Potri.009G152000.2.p locus=Potri.009G152000 ID=Potri.009G152000.2.v4.1 annot-version=v4.1 ATGTACTGCACCATTAATTCCTTCTCCAACAACATCCCCACGCACCCAAAACCCATACAAAAAACTTGGTACACTACTTTTCCAGGCATCCCCCAGTTAG GTGCTCGACTGCCTTCTCGTAGACAAGAAACTTGGGTGCCTGTCCTAATTTCTTCGCAAGAAAAAACTACAGTCCAGGGAGATAATGCAGACACCGGATC ATGGCTTGGAAAGATAGCATTATCAAATTCACTATTTCTGTCCTCTCACATTTCAAGATTCCAAAATTGCCTGAGAACCACCATATCCAAATTCATCGAC CACCGGCCTCCTCTTCATCTTTCGGTCGATCCATGTCAAGTGTTCACGGGGAATTTTGCTCCAGTGGATGAACTTGAGCCCACTAACTGCACTGTAGTGG AGGGTGAGCTCCCTGGCTGTCTAAATGGTGTGTATATTAGAAATGGTTCAAACCCACAACACATTCCTAATGGTCCTCTTCATTTCTTTGAAGGAGATGG CATGCTTCATTCCTTGAAATTATCCGGTGGCCAAGCAACCCATTGCAGTCGCTATGTCAAGACTTACAAATACATGCTTGAGAAAGAAGCAGGTTTTCCC ATCTTTCCAAATATATTATCTGGCTTTTATAGCCTTCCTGACGTCCTTGCTTATGTCATGGTTGCAGGAAGGGTTCTGTGTGGCCAAATCAATCTCATGA GGAAGAGGCATGCCTGCCTGTGGTTTGTGAGCAAAAAAAAAAAAATTAGAAAAAAATTAATTAAAAATATATATATAAAAAAACAAACAAAAGGCATCAG TCTTTTTATTATAGACTATACTATACAGTCCATAGTCAAAAACATAAAAATAACAAAAAAAAAATCTCTAATTAGCCCAATCTAA
AA sequence Show only first row Show all	>Potri.009G152000.2 pacid=42771213 polypeptide=Potri.009G152000.2.p locus=Potri.009G152000 ID=Potri.009G152000.2.v4.1 annot-version=v4.1 MYCTINSFSNNIPTHPKPIQKTWYTTFPGIPQLGARLPSRRQETWVPVLISSQEKTTVQGDNADTGSWLGKIALSNSLFLSSHISRFQNCLRTTISKFID HRPPLHLSVDPCQVFTGNFAPVDELEPTNCTVVEGELPGCLNGVYIRNGSNPQHIPNGPLHFFEGDGMLHSLKLSGGQATHCSRYVKTYKYMLEKEAGFP IFPNILSGFYSLPDVLAYVMVAGRVLCGQINLMRKRHACLWFVSKKKKIRKKLIKNIYIKKQTKGISLFIIDYTIQSIVKNIKITKKKSLISPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152000 [exp]	0	1
AT5G35110			unknown protein		Potri.018G113901 [exp]	9.27	0.9827
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Potri.007G042200 [exp]	14.21	0.9816
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G151900 [exp]	17.05	0.9812
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.003G124500 [exp]	20.09	0.9810
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012401 [exp]	21.49	0.8702
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G152300 [exp]	22.13	0.9805
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023014 [exp]	24.12	0.9804
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023020 [exp]	26.45	0.9800
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.019G023006 [exp]	29.24	0.9792
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.012G102000 [exp]	33.01	0.9787

Compare expression of checked genes

Potri.009G152000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.